SRR1545117_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545117_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	894005
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5044	0.5642026610589426	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1178	0.13176660085793704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	55	1.8189894E-12	45.0	25
CTTAACG	25	3.8901082E-5	45.0	1
TTTAGCG	35	1.2115197E-7	45.0	1
CGTGGTA	25	3.8901082E-5	45.0	45
CGTGGAT	20	7.032445E-4	45.0	21
CGGAAAG	20	7.032445E-4	45.0	2
CTCACGA	55	1.8189894E-12	45.0	24
AAATCGA	25	3.8901082E-5	45.0	18
GCGACTG	35	1.2115197E-7	45.0	1
GCGACGG	25	3.8901082E-5	45.0	2
CTCGTAG	25	3.8901082E-5	45.0	1
AATCACG	25	3.8901082E-5	45.0	1
CAAGTCG	20	7.032445E-4	45.0	15
CGAGTCA	20	7.032445E-4	45.0	25
CAACGAA	20	7.032445E-4	45.0	39
CATGCGG	40	6.8121153E-9	45.0	2
GCGAAGT	20	7.032445E-4	45.0	43
ACACCTA	45	3.8380676E-10	45.0	10
TAGCGTG	50	2.1827873E-11	45.0	1
GACGTAC	20	7.032445E-4	45.0	27