SRR1545116_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545116_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1339227
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4723	0.35266612754969845	No Hit
AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTAT	1992	0.14874252087211504	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1559	0.11641043676688119	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1457	0.10879410286680302	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1435	0.10715136418247243	No Hit
TTGATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1405	0.10491126597656708	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	35	1.2121382E-7	45.000004	1
ATTCGGA	35	1.2121382E-7	45.000004	14
TTGCGAG	35	1.2121382E-7	45.000004	1
GCGATAC	35	1.2121382E-7	45.000004	9
CTCGCAC	35	1.2121382E-7	45.000004	13
CTCGAGG	35	1.2121382E-7	45.000004	2
CGCACAA	35	1.2121382E-7	45.000004	15
GCTACGG	145	0.0	45.000004	2
AATACGG	140	0.0	45.000004	2
AAAGCGT	70	0.0	45.000004	5
CGGACAA	20	7.033705E-4	45.0	17
CCTTCGT	40	6.8157533E-9	45.0	23
CTTCGTC	40	6.8157533E-9	45.0	24
GTCATCG	25	3.891152E-5	45.0	9
CGGGTGC	55	1.8189894E-12	45.0	6
CGGGTCG	20	7.033705E-4	45.0	6
CGGGTCA	55	1.8189894E-12	45.0	6
CGGGTAT	110	0.0	45.0	6
AGCGTCA	20	7.033705E-4	45.0	35
CTATGCG	75	0.0	45.0	1