SRR1545113_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545113_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1115245
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5379	0.48231554501477253	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2513	0.22533165358284502	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1914	0.17162148227519514	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1682	0.15081887836305027	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1401	0.12562262103842653	No Hit
GTTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1327	0.11898730772162171	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	30	2.1654432E-6	45.000004	32
GCGACAG	30	2.1654432E-6	45.000004	1
CACGGGC	30	2.1654432E-6	45.000004	4
CGACGCA	30	2.1654432E-6	45.000004	43
TCCGATG	45	3.8562575E-10	45.000004	1
CGTGCAT	45	3.8562575E-10	45.000004	23
ACACCAT	30	2.1654432E-6	45.000004	39
CAACCGT	30	2.1654432E-6	45.000004	9
AATGCGT	60	0.0	45.000004	22
CTAACGG	45	3.8562575E-10	45.000004	1
ACGGCAT	30	2.1654432E-6	45.000004	18
ACGTGCA	45	3.8562575E-10	45.000004	22
ACGCTAG	30	2.1654432E-6	45.000004	1
CTCGATG	65	0.0	45.000004	1
ATGTTCG	30	2.1654432E-6	45.000004	1
TGATGCG	65	0.0	45.000004	1
ATACCGG	65	0.0	45.000004	2
CTGTGCG	30	2.1654432E-6	45.000004	1
TACGTAG	65	0.0	45.000004	1
TGTCACG	40	6.8139343E-9	45.0	1