SRR1545112_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545112_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1529426
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6887	0.45029965490321205	No Hit
TTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1686	0.11023743548233128	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1614	0.10552978699198261	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1574	0.10291442671956669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAA	20	7.0340186E-4	45.000004	25
ACCGGGT	20	7.0340186E-4	45.000004	4
CGTATTA	20	7.0340186E-4	45.000004	31
CTCGTAG	65	0.0	45.000004	1
CACGGGT	40	6.8175723E-9	45.000004	4
GACACGC	20	7.0340186E-4	45.000004	13
CGCATCA	20	7.0340186E-4	45.000004	22
CCAGCGA	20	7.0340186E-4	45.000004	34
TTCGTGC	20	7.0340186E-4	45.000004	1
ATTCGCA	20	7.0340186E-4	45.000004	43
CTAAGCG	80	0.0	45.000004	1
CGATTAC	20	7.0340186E-4	45.000004	17
ACGGGCT	80	0.0	45.000004	5
TGGTTCG	20	7.0340186E-4	45.000004	37
TACGCGA	20	7.0340186E-4	45.000004	43
CGCTACT	20	7.0340186E-4	45.000004	39
ACGCTTC	65	0.0	45.000004	24
GACGGAC	20	7.0340186E-4	45.000004	29
CGAGAAT	20	7.0340186E-4	45.000004	25
ACGTACT	20	7.0340186E-4	45.000004	19