SRR1545111_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545111_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1469760
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5049	0.3435254735467015	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1885	0.12825223165686916	No Hit
ATAGTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT	1871	0.12729969518833006	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1698	0.11552906596995428	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1684	0.1145765295014152	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1648	0.11212715001088613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGG	45	3.8562575E-10	45.000004	1
CCGGGTA	45	3.8562575E-10	45.000004	5
ACCGGGT	45	3.8562575E-10	45.000004	4
TGTTGCG	90	0.0	45.000004	1
GCGTAAG	185	0.0	45.000004	1
AATCGAG	45	3.8562575E-10	45.000004	1
TCACGAG	25	3.8913382E-5	45.0	1
AACGTTG	20	7.03393E-4	45.0	1
CGGGTAC	20	7.03393E-4	45.0	6
AGTCCAA	20	7.03393E-4	45.0	20
CTCGTTG	55	1.8189894E-12	45.0	1
TTAGCGA	50	2.1827873E-11	45.0	13
TATGGGC	255	0.0	45.0	4
TAGCGCG	50	2.1827873E-11	45.0	1
ATAGCCG	35	1.2122291E-7	45.0	2
ACCGAGT	20	7.03393E-4	45.0	38
AAGCGTG	50	2.1827873E-11	45.0	18
CGCGATT	25	3.8913382E-5	45.0	15
TATGCGT	35	1.2122291E-7	45.0	11
CCTCGGA	40	6.8175723E-9	45.0	27