##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545111_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1469760 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.805486610058786 31.0 31.0 33.0 28.0 33.0 2 31.10901099499238 31.0 31.0 33.0 30.0 34.0 3 31.26940997169606 31.0 31.0 34.0 28.0 34.0 4 35.14142921293272 35.0 35.0 37.0 32.0 37.0 5 35.01683268016547 35.0 35.0 37.0 32.0 37.0 6 35.10550838232092 37.0 35.0 37.0 32.0 37.0 7 35.47967559329415 35.0 35.0 37.0 35.0 37.0 8 35.528671347703025 37.0 35.0 37.0 35.0 37.0 9 37.368954114957546 39.0 37.0 39.0 35.0 39.0 10 36.90292156542565 39.0 37.0 39.0 32.0 39.0 11 36.46118345852384 38.0 35.0 39.0 32.0 39.0 12 34.95905726104942 35.0 34.0 39.0 30.0 39.0 13 34.491372741127805 35.0 33.0 39.0 27.0 39.0 14 35.10751823426954 35.0 33.0 40.0 27.0 41.0 15 35.6029753156978 35.0 33.0 40.0 30.0 41.0 16 35.8306601077727 35.0 34.0 40.0 31.0 41.0 17 35.66842341606793 35.0 34.0 40.0 31.0 41.0 18 35.77495509470934 36.0 35.0 39.0 31.0 41.0 19 35.64569181362943 36.0 34.0 39.0 31.0 41.0 20 35.34202386784237 35.0 34.0 39.0 30.0 41.0 21 35.19666476159373 35.0 34.0 39.0 30.0 41.0 22 35.026926164816025 35.0 34.0 39.0 29.0 41.0 23 34.98321222512519 35.0 34.0 39.0 29.0 41.0 24 35.081927661659044 35.0 34.0 39.0 30.0 41.0 25 34.989035624863924 35.0 34.0 39.0 30.0 41.0 26 34.723241209449164 35.0 34.0 39.0 29.0 41.0 27 34.707254245591116 35.0 34.0 39.0 29.0 41.0 28 34.79272262138036 35.0 34.0 39.0 29.0 41.0 29 34.79371870237318 36.0 34.0 39.0 29.0 41.0 30 34.74173742651862 35.0 34.0 39.0 29.0 41.0 31 34.479585782712824 35.0 34.0 39.0 28.0 41.0 32 34.31456700413673 35.0 34.0 39.0 27.0 41.0 33 34.08426409753974 35.0 33.0 39.0 26.0 41.0 34 33.891927933812326 35.0 33.0 39.0 24.0 41.0 35 33.65894771935554 35.0 33.0 39.0 23.0 41.0 36 33.4110541857174 35.0 33.0 39.0 23.0 41.0 37 33.43026412475506 35.0 33.0 39.0 23.0 41.0 38 33.49818201611147 35.0 33.0 39.0 23.0 41.0 39 33.48747346505552 35.0 33.0 39.0 23.0 41.0 40 33.088845117570216 35.0 32.0 39.0 23.0 41.0 41 33.21229384389288 35.0 32.0 39.0 23.0 41.0 42 33.220507429784455 35.0 32.0 39.0 23.0 41.0 43 33.16878129762682 35.0 32.0 39.0 23.0 41.0 44 33.134385205747876 35.0 32.0 38.0 23.0 41.0 45 33.245012791204005 35.0 33.0 38.0 23.0 41.0 46 33.24517472240366 35.0 33.0 38.0 23.0 41.0 47 33.160712633355104 35.0 32.0 38.0 23.0 41.0 48 33.21346342259961 35.0 33.0 38.0 23.0 41.0 49 33.260697664924884 35.0 32.0 38.0 23.0 40.0 50 33.017430736991074 35.0 32.0 38.0 23.0 40.0 51 32.66828325713042 35.0 32.0 38.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 2.0 12 0.0 13 4.0 14 11.0 15 35.0 16 145.0 17 410.0 18 1017.0 19 2047.0 20 3589.0 21 5706.0 22 8835.0 23 12540.0 24 17498.0 25 23482.0 26 29851.0 27 33984.0 28 37947.0 29 42888.0 30 50719.0 31 62680.0 32 79357.0 33 105303.0 34 193154.0 35 274940.0 36 78704.0 37 93783.0 38 132796.0 39 178266.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.40964511212715 27.346437513607665 26.15413400827346 14.089783365991726 2 30.369448073154803 26.887314935771826 29.417183757892445 13.326053233180927 3 27.03631885477901 26.955489331591554 33.45240039190072 12.555791421728719 4 24.78030426736338 28.22127422164163 33.61671293272371 13.381708578271281 5 20.72583278902678 34.115842042238185 32.7895030481167 12.368822120618333 6 19.377721532767257 41.36518887437405 29.300361963858045 9.956727629000653 7 86.27823590246027 4.913931526235576 7.564840518179839 1.2429920531243195 8 88.00457217504899 3.4488623993032874 7.060132266492489 1.4864331591552362 9 84.25532059655998 4.927811343348574 8.54479642934901 2.2720716307424342 10 62.11497115175266 19.2322556063575 12.74412148922273 5.908651752667103 11 59.368060091443496 15.649697909862834 17.94388199433921 7.038360004354452 12 51.97794197692141 21.19060254735467 18.93064173742652 7.900813738297409 13 17.22206346614413 55.44803233180927 18.84436914870455 8.485535053342042 14 9.261784236882212 54.895493141737425 25.868305029392552 9.974417591987809 15 7.9312949052906605 21.76566242107555 60.91429893315915 9.388743740474634 16 8.541258436751578 15.994652188112346 57.81957598519486 17.644513389941217 17 9.274983670803397 17.028902677988242 30.839524820378838 42.85658883082952 18 15.01660134988025 22.24594491617679 45.74814935771826 16.98930437622469 19 33.15296374918354 18.401507729153057 28.691691160461573 19.75383736120183 20 32.86699869366427 20.403059002830396 29.723424232527762 17.006518070977574 21 15.59302198998476 35.35733725234052 31.885001632919664 17.164639124755062 22 18.719314718049205 24.14183268016547 22.0746924667973 35.06416013498803 23 11.59094001741781 33.94547409100805 26.09289952101023 28.370686370563902 24 9.761729806226867 19.953257674722405 57.755075658610934 12.5299368604398 25 9.281515349444808 24.962306771173527 49.32111365120836 16.435064228173307 26 8.939350642281733 42.78936697147834 29.533461245373395 18.737821140866536 27 9.403712170694535 52.49129109514479 25.977574569997824 12.127422164162857 28 8.024235249292401 36.06269050729371 43.460224798606575 12.452849444807315 29 8.657467885913347 25.3015458306118 41.58685771826693 24.454128565207924 30 13.381504463313737 44.25239494883518 29.843171674286957 12.522928913564119 31 33.019608643588064 30.239698998475937 25.877013934247767 10.86367842368822 32 36.57515512736773 21.326611147398214 30.96253810145874 11.13569562377531 33 36.33940235140431 27.574093729588505 20.613161332462443 15.473342586544742 34 19.41378184193338 26.139777922926193 24.293285978663185 30.15315425647725 35 18.351227411278032 24.487807533202698 35.514913999564556 21.64605105595471 36 38.70455040278685 26.53004572175049 22.453665904637493 12.311737970825169 37 14.742270846940997 46.248026888743745 28.073903222294796 10.935799042020466 38 15.374142717178316 44.08311561071196 21.724091008055737 18.818650664053997 39 19.41949706074461 41.29789897670368 26.509225996080993 12.773377966470717 40 28.02736501197474 24.166938819943393 24.603880905726104 23.20181526235576 41 12.886593729588505 24.398337143479207 27.89373775310255 34.821331373829736 42 15.626020574787722 20.429389832353582 26.824175375571524 37.12041421728718 43 16.728989767036794 20.87674178097104 29.89821467450468 32.49605377748748 44 10.393465599825822 32.01760831700414 35.65554920531243 21.93337687785761 45 10.637927280644458 54.32261049423035 21.37981711299804 13.65964511212715 46 18.514791530590028 43.28305301545831 22.771745046810363 15.4304104071413 47 17.108235358153713 30.71583115610712 24.630483888526015 27.54544959721315 48 18.126905072937078 27.339973873285434 39.75200032658393 14.781120727193557 49 23.340817548443283 26.44921619856303 38.3367352492924 11.873231003701285 50 19.017866862617026 45.031637818419334 23.477438493359458 12.47305682560418 51 15.718212497278467 39.75778358371434 24.190888308295232 20.333115610711953 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2124.0 1 2601.0 2 3078.0 3 6697.5 4 10317.0 5 8356.0 6 6395.0 7 6813.0 8 7231.0 9 7643.0 10 8055.0 11 8191.0 12 8327.0 13 8273.5 14 8220.0 15 7884.0 16 7548.0 17 7239.5 18 6931.0 19 6849.0 20 6767.0 21 7332.5 22 7898.0 23 8367.0 24 8836.0 25 10276.0 26 14234.0 27 16752.0 28 22611.0 29 28470.0 30 33342.0 31 38214.0 32 43361.0 33 48508.0 34 47899.0 35 47290.0 36 55713.5 37 64137.0 38 75990.0 39 87843.0 40 126306.0 41 164769.0 42 196739.5 43 228710.0 44 223622.5 45 218535.0 46 187631.5 47 156728.0 48 128568.0 49 100408.0 50 85056.0 51 69704.0 52 54014.0 53 38324.0 54 27770.0 55 17216.0 56 13736.5 57 10257.0 58 9048.5 59 7840.0 60 7215.0 61 6590.0 62 5827.0 63 5064.0 64 4222.5 65 3381.0 66 2829.5 67 2278.0 68 2004.0 69 1730.0 70 1517.5 71 1305.0 72 1156.0 73 1007.0 74 783.5 75 469.5 76 379.0 77 269.5 78 160.0 79 112.5 80 65.0 81 58.0 82 51.0 83 34.5 84 18.0 85 17.0 86 16.0 87 9.0 88 2.0 89 3.0 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1469760.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.988769764075613 #Duplication Level Percentage of deduplicated Percentage of total 1 81.26767326916968 13.806377904320458 2 7.4533518645787495 2.5324655759594408 3 2.550059992910838 1.2996714631242754 4 1.4090053243093472 0.9574906820419276 5 0.967082104674948 0.8214767609640181 6 0.6350197991290034 0.647292309781931 7 0.48145172825368565 0.5725490794672714 8 0.4052424313206528 0.5507656291472635 9 0.31684898246231924 0.4844586971730575 >10 2.8526035110585086 9.973587813325041 >50 0.4620188929524095 5.656153203858738 >100 1.0594294090881986 46.90648465491296 >500 0.13177582335264662 13.682880956956453 >1k 0.008035111180039427 1.7637342212813347 >5k 4.017555590019714E-4 0.3446110476858271 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5049 0.3435254735467015 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1885 0.12825223165686916 No Hit ATAGTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT 1871 0.12729969518833006 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1698 0.11552906596995428 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1684 0.1145765295014152 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1648 0.11212715001088613 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04089102982799913 0.0 2 0.0 0.0 0.0 0.1530862181580666 0.0 3 0.0 0.0 0.0 0.20479534073590247 0.0 4 0.0 0.0 0.0 0.31773895057696494 0.0 5 0.0 0.0 0.0 0.5916612236011322 0.0 6 0.0 0.0 0.0 0.7928505334204223 0.0 7 0.0 0.0 0.0 0.952128238623993 0.0 8 0.0 0.0 0.0 1.3468865665142609 0.0 9 0.0 0.0 0.0 1.477384062704115 0.0 10 0.0 0.0 0.0 1.751306335728282 0.0 11 0.0 0.0 0.0 1.9199052906596996 0.0 12 0.0 0.0 0.0 2.1125898105813192 0.0 13 0.0 0.0 0.0 2.179879708251687 0.0 14 0.0 0.0 0.0 2.2028086218158065 0.0 15 0.0 0.0 0.0 2.248938602220771 0.0 16 0.0 0.0 0.0 2.328883627258872 0.0 17 0.0 0.0 0.0 2.4171973655562815 0.0 18 0.0 0.0 0.0 2.5640240583496627 0.0 19 0.0 0.0 0.0 2.61981548007838 0.0 20 0.0 0.0 0.0 2.677511974744176 0.0 21 0.0 0.0 0.0 2.760382647507076 0.0 22 0.0 0.0 0.0 2.8446140866536034 0.0 23 0.0 0.0 0.0 2.958918462878293 0.0 24 0.0 0.0 0.0 3.040972675811017 0.0 25 0.0 0.0 0.0 3.108126496843022 0.0 26 0.0 0.0 0.0 3.1790904637491835 0.0 27 0.0 0.0 0.0 3.2499183540169825 0.0 28 0.0 0.0 0.0 3.3174123666448945 0.0 29 0.0 0.0 0.0 3.3965409318528197 0.0 30 0.0 0.0 0.0 3.5161522969736554 0.0 31 0.0 0.0 0.0 3.6227003048116697 0.0 32 0.0 0.0 0.0 3.7106738515131723 0.0 33 0.0 0.0 0.0 3.7954495972131506 0.0 34 0.0 0.0 0.0 3.8836272588721967 0.0 35 0.0 0.0 0.0 4.007661114739822 0.0 36 0.0 0.0 0.0 4.114685390812105 0.0 37 0.0 0.0 0.0 4.21823971260614 0.0 38 0.0 0.0 0.0 4.314445895928587 0.0 39 0.0 0.0 0.0 4.409835619420858 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGG 45 3.8562575E-10 45.000004 1 CCGGGTA 45 3.8562575E-10 45.000004 5 ACCGGGT 45 3.8562575E-10 45.000004 4 TGTTGCG 90 0.0 45.000004 1 GCGTAAG 185 0.0 45.000004 1 AATCGAG 45 3.8562575E-10 45.000004 1 TCACGAG 25 3.8913382E-5 45.0 1 AACGTTG 20 7.03393E-4 45.0 1 CGGGTAC 20 7.03393E-4 45.0 6 AGTCCAA 20 7.03393E-4 45.0 20 CTCGTTG 55 1.8189894E-12 45.0 1 TTAGCGA 50 2.1827873E-11 45.0 13 TATGGGC 255 0.0 45.0 4 TAGCGCG 50 2.1827873E-11 45.0 1 ATAGCCG 35 1.2122291E-7 45.0 2 ACCGAGT 20 7.03393E-4 45.0 38 AAGCGTG 50 2.1827873E-11 45.0 18 CGCGATT 25 3.8913382E-5 45.0 15 TATGCGT 35 1.2122291E-7 45.0 11 CCTCGGA 40 6.8175723E-9 45.0 27 >>END_MODULE