SRR1545108_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545108_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1620678
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9392	0.5795105505226825	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCG	5346	0.3298619466667654	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTC	4025	0.24835284985666495	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGC	2525	0.1557989927672246	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2187	0.13494352363640402	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1792	0.11057100793618474	No Hit
ATTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1668	0.10291988908345767	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGC	35	1.2123382E-7	45.000004	21
CGAACCC	35	1.2123382E-7	45.000004	34
GTTTACG	125	0.0	45.000004	1
ATTACCG	90	0.0	45.000004	1
ATACTCC	70	0.0	45.000004	13
CGTTAGT	45	3.8562575E-10	45.000004	39
ATATCCG	35	1.2123382E-7	45.000004	1
ACGGCTA	45	3.8562575E-10	45.000004	30
TACACGA	35	1.2123382E-7	45.000004	21
GGTAGCG	35	1.2123382E-7	45.000004	1
GTTGCGT	35	1.2123382E-7	45.000004	18
AACCGCT	40	6.8175723E-9	45.0	31
AATCCGT	25	3.891517E-5	45.0	16
ATCTCGG	20	7.0341444E-4	45.0	45
CAACGAA	25	3.891517E-5	45.0	15
ACGCAAC	25	3.891517E-5	45.0	22
CGGCCCA	100	0.0	45.0	31
CGTTGTA	25	3.891517E-5	45.0	32
ATCCGAT	25	3.891517E-5	45.0	36
AACGGAC	20	7.0341444E-4	45.0	5