SRR1545106_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545106_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1208439
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4835	0.4001029427219744	No Hit
TTTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1511	0.12503734156213098	No Hit
TTTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1311	0.10848706471737506	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1301	0.10765955087513727	No Hit
AAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1271	0.10517700934842389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	80	0.0	45.000004	28
TCACGAC	40	6.8157533E-9	45.000004	25
CTCACGA	40	6.8157533E-9	45.000004	24
ACAGTCG	55	1.8189894E-12	45.000004	1
ACGTTCG	55	1.8189894E-12	45.000004	2
ACGTTCC	20	7.03343E-4	45.000004	12
TAGGTCG	20	7.03343E-4	45.000004	1
GTTAGAC	20	7.03343E-4	45.000004	39
TACGGAG	20	7.03343E-4	45.000004	4
TCGATAG	20	7.03343E-4	45.000004	1
AACGGTC	20	7.03343E-4	45.000004	42
AACGATT	20	7.03343E-4	45.000004	33
TCCAATC	20	7.03343E-4	45.000004	30
ACGTCAC	40	6.8157533E-9	45.000004	34
TCATACG	40	6.8157533E-9	45.000004	2
CACGTTC	20	7.03343E-4	45.000004	11
AGTAGCG	175	0.0	45.000004	1
CGCGTAG	20	7.03343E-4	45.000004	13
CACAACG	20	7.03343E-4	45.000004	1
TGTAACG	55	1.8189894E-12	45.000004	1