SRR1545105_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545105_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2349195
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16616	0.7073061197559164	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3715	0.1581392774971852	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3439	0.14639057208958814	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3198	0.13613173874454867	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2364	0.10063021588246185	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATG	135	0.0	45.000004	1
TGTTCGA	60	0.0	45.000004	21
ATCGGCA	60	0.0	45.000004	33
GACTCGA	30	2.1664728E-6	45.000004	28
ACGCGAT	20	7.0347916E-4	45.0	42
TCGCACC	20	7.0347916E-4	45.0	45
TAACGAC	20	7.0347916E-4	45.0	32
ACGATTG	20	7.0347916E-4	45.0	29
CGACTTA	20	7.0347916E-4	45.0	11
ACTCACG	45	3.8562575E-10	45.0	17
TAAGCGA	40	6.8212103E-9	45.0	2
TCTCGAT	65	0.0	44.999996	27
CTCGATA	65	0.0	44.999996	28
ACGGGCT	285	0.0	42.63158	5
TATAGCG	175	0.0	42.42857	1
GTACGCG	85	0.0	42.35294	1
CAACCGT	80	0.0	42.1875	37
CGTTTTT	13860	0.0	42.142857	1
GCGATAT	150	0.0	42.0	9
AGGGATC	1300	0.0	41.884617	6