##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545101_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2007277 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.132298133242198 31.0 31.0 33.0 30.0 33.0 2 31.472739935743796 31.0 31.0 34.0 30.0 34.0 3 31.614035332442906 31.0 31.0 34.0 30.0 34.0 4 35.42728980604072 37.0 35.0 37.0 33.0 37.0 5 35.36312875602122 37.0 35.0 37.0 33.0 37.0 6 35.420643488666485 37.0 35.0 37.0 33.0 37.0 7 35.74675543036661 37.0 35.0 37.0 35.0 37.0 8 35.83898584998483 37.0 35.0 37.0 35.0 37.0 9 37.768841569947746 39.0 38.0 39.0 35.0 39.0 10 37.38232192168794 39.0 37.0 39.0 35.0 39.0 11 36.802486154128204 39.0 35.0 39.0 33.0 39.0 12 34.69149100996026 35.0 34.0 38.0 31.0 39.0 13 34.0254499005369 35.0 33.0 38.0 26.0 39.0 14 34.49174030290787 35.0 33.0 39.0 25.0 41.0 15 35.148020427673906 35.0 33.0 39.0 30.0 41.0 16 35.49748490118703 35.0 34.0 39.0 32.0 41.0 17 35.41387810451672 35.0 34.0 38.0 32.0 41.0 18 35.58364590437692 36.0 35.0 38.0 31.0 41.0 19 35.45032399614004 36.0 35.0 38.0 31.0 41.0 20 35.07032512204344 35.0 34.0 38.0 31.0 41.0 21 34.865878501073844 35.0 34.0 38.0 31.0 41.0 22 34.70620796232907 35.0 34.0 38.0 30.0 41.0 23 34.75824711786166 35.0 34.0 38.0 30.0 41.0 24 34.88033290871165 35.0 34.0 38.0 31.0 41.0 25 34.78321726398499 35.0 34.0 37.0 31.0 41.0 26 34.592679535510044 35.0 34.0 37.0 31.0 40.0 27 34.56489562726021 35.0 34.0 37.0 30.0 40.0 28 34.78589950465232 35.0 34.0 37.0 31.0 40.0 29 34.85286983311222 35.0 34.0 37.0 31.0 40.0 30 34.81529006709089 35.0 34.0 37.0 31.0 40.0 31 34.42867426867343 35.0 34.0 37.0 30.0 40.0 32 34.21389773309812 35.0 34.0 37.0 29.0 40.0 33 33.956056388829246 35.0 33.0 37.0 29.0 40.0 34 33.831522007176886 35.0 34.0 37.0 27.0 40.0 35 33.57433876839121 35.0 33.0 37.0 27.0 40.0 36 33.25090209273558 35.0 33.0 37.0 23.0 40.0 37 33.268236521416824 35.0 33.0 37.0 24.0 40.0 38 33.395628505682076 35.0 33.0 36.0 27.0 40.0 39 33.42427627078874 35.0 33.0 36.0 25.0 40.0 40 33.00336276458107 35.0 32.0 36.0 23.0 40.0 41 33.257193202532584 35.0 33.0 36.0 23.0 40.0 42 33.23053121218447 35.0 33.0 36.0 23.0 40.0 43 33.19555547141725 35.0 33.0 36.0 24.0 40.0 44 33.176924261076074 35.0 33.0 36.0 23.0 40.0 45 33.214343610772204 35.0 33.0 36.0 24.0 40.0 46 33.294631483347835 35.0 33.0 36.0 25.0 40.0 47 33.284643823448384 35.0 33.0 36.0 26.0 40.0 48 33.35103924371175 35.0 33.0 36.0 25.0 40.0 49 33.47537534680067 35.0 33.0 36.0 24.0 40.0 50 33.161708623174576 35.0 33.0 36.0 24.0 40.0 51 32.85121684750037 35.0 33.0 36.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 2.0 13 5.0 14 12.0 15 20.0 16 97.0 17 296.0 18 729.0 19 1630.0 20 3009.0 21 5193.0 22 8182.0 23 12734.0 24 18827.0 25 27556.0 26 35785.0 27 41303.0 28 45515.0 29 51637.0 30 63387.0 31 80977.0 32 109145.0 33 154420.0 34 328180.0 35 524078.0 36 77110.0 37 90652.0 38 129742.0 39 196892.0 40 157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.428800310071804 26.013848611825875 33.3715775152109 13.18577356289142 2 29.454629331178506 26.235193249362194 32.096367367333954 12.213810052125341 3 27.401051274936144 24.09204110842699 36.244026110995144 12.262881505641722 4 22.94396837108182 29.452487125593528 34.51830514672364 13.085239356601008 5 22.388738574695967 32.733449344559816 33.36674509796107 11.511066982783143 6 20.551324007598353 40.0372245584441 29.48955226408712 9.921899169870427 7 88.60849798009941 3.9860965875661405 6.193763989723392 1.2116414426110598 8 92.36373455183315 1.6325599306921765 5.331700607340193 0.6720049101344757 9 90.23184144490271 2.6918058643625167 6.12122791224131 0.9551247784934516 10 77.23702309148165 10.281690070677838 8.845963960131064 3.6353228777094544 11 74.70234551584062 9.286112479742457 12.109389984541247 3.902152019875682 12 62.10209153993196 19.673966273713095 13.288001606156003 4.935940580198946 13 15.095325657594842 65.66149066621098 14.19415456860214 5.049029107592026 14 6.251952271659567 62.73454037484613 26.102227046889894 4.91128030660442 15 4.7574400543622035 17.947747122096253 71.84987423260468 5.444938590936877 16 5.094413974752862 10.74017188459789 68.23432939250537 15.931084748143878 17 6.5567432895410045 10.32000067753479 30.88069060722561 52.242565425698594 18 15.624051887208394 17.98964467783968 50.802803997654536 15.583499437297393 19 40.914482654860294 13.143029088660906 28.534377666859136 17.408110589619668 20 39.88293593759107 17.838893187138595 26.18492614621699 16.09324472905334 21 15.036987919455063 36.36194705563806 31.42466136960669 17.17640365530019 22 17.16031220404558 22.577800672254003 18.127592753765427 42.13429436993499 23 9.061728899399535 36.62653435475024 24.86373330636479 29.448003439485433 24 7.813819418047434 15.95828577719966 65.3873381700682 10.840556634684699 25 6.0876999038996615 21.564138880682638 56.76650507129808 15.581656144119622 26 5.224092140745896 49.37963220821043 29.41387760632937 15.982398044714309 27 5.5848295975094615 59.786865489914945 26.345541746355885 8.282763166219711 28 4.764464495931553 34.86564136389746 51.45801999425091 8.91187414592007 29 5.863814510902083 23.884645716560296 47.92178657953038 22.329753193007242 30 13.232304260946545 47.95865244308583 28.89342128664853 9.915622009319094 31 41.27850814810313 27.007184359707203 24.244287161164106 7.470020331025563 32 46.14400503767044 16.82368701479666 30.18721382250681 6.845094125026092 33 44.60296212231795 23.415502693449884 17.256213268024293 14.725321916207879 34 20.286985802158846 23.398016317628308 22.173322366569238 34.14167551364361 35 18.203317230257706 21.246345173087718 39.76675864865686 20.78357894799771 36 47.84725775266692 21.54924307905685 21.416725245195355 9.186773923080871 37 14.854800807262775 50.77445713770447 25.835198629785527 8.535543425247239 38 15.91907843312109 49.79945468413179 17.677879037123425 16.6035878456237 39 20.99535838850343 44.49445691850203 23.39403081886556 11.116153874128981 40 33.51694858258227 19.988372307359672 21.488264947986753 25.006414162071305 41 11.220324848040406 19.50224109577303 25.352953279492567 43.924480776694 42 15.818295133158006 15.178074575656474 24.528851772824577 44.47477851836094 43 15.215139714150064 15.665301799402872 30.099632487195336 39.01992599925172 44 8.682907241999983 30.862506769120557 39.90958896056698 20.544997028312483 45 9.147865491409506 61.14686712396944 18.550005803882573 11.155261580738483 46 18.079517674939733 45.98916841073753 21.570615316172105 14.360698598150629 47 16.404811094831455 27.82889456711754 23.55609116230595 32.21020317574505 48 18.53829840126699 23.933717170076676 45.391443233793844 12.136541194862493 49 23.617567480721398 23.978703487361237 42.397486744480204 10.00624228743716 50 17.958757062428354 51.758277507289726 19.826610876326487 10.456354553955432 51 15.651352553733242 45.46223565556722 21.65869483882892 17.22771695187062 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3125.0 1 3261.0 2 3397.0 3 7493.0 4 11589.0 5 9677.5 6 7766.0 7 8795.5 8 9825.0 9 10930.5 10 12036.0 11 12465.5 12 12895.0 13 12718.5 14 12542.0 15 11600.0 16 10658.0 17 9436.5 18 8215.0 19 8195.0 20 8175.0 21 7060.5 22 5946.0 23 7526.5 24 9107.0 25 9344.5 26 10294.0 27 11006.0 28 14412.5 29 17819.0 30 21954.5 31 26090.0 32 34214.5 33 42339.0 34 46619.5 35 50900.0 36 54883.5 37 58867.0 38 87613.5 39 116360.0 40 192077.5 41 267795.0 42 326185.0 43 384575.0 44 370304.5 45 356034.0 46 294543.5 47 233053.0 48 184261.5 49 135470.0 50 110203.0 51 84936.0 52 63539.0 53 42142.0 54 30273.5 55 18405.0 56 13938.5 57 9472.0 58 8306.5 59 7141.0 60 6620.0 61 6099.0 62 5459.5 63 4820.0 64 3840.5 65 2861.0 66 2540.5 67 2220.0 68 1956.5 69 1693.0 70 1296.0 71 899.0 72 744.5 73 590.0 74 487.0 75 298.0 76 212.0 77 158.5 78 105.0 79 90.5 80 76.0 81 55.5 82 35.0 83 24.5 84 14.0 85 8.5 86 3.0 87 2.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2007277.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.42585010454599 #Duplication Level Percentage of deduplicated Percentage of total 1 80.66676623170667 10.023531456136393 2 7.92998047991741 1.9707349755085886 3 2.5897310059471574 0.9653882787298343 4 1.3168755562855172 0.6545319307497781 5 0.8065313947836538 0.5010919108096045 6 0.5920344334904779 0.4413918676369488 7 0.41523480477491986 0.36117518096265006 8 0.35706896771889773 0.35495083758879953 9 0.3069119311552136 0.343227748664828 >10 3.005115935482865 8.00262784498531 >50 0.45821839430117234 4.054701372656557 >100 1.210661230925436 42.2439519172536 >500 0.30467503753037206 23.413611683390336 >1k 0.039792650020457565 6.364467205084509 >5k 4.019459598026016E-4 0.30461578984226845 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6099 0.30384446192528486 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2430 0.12105952491858374 No Hit AGTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA 2059 0.10257677440632258 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.017934744432382774 0.0 2 0.0 0.0 0.0 0.07288480862382223 0.0 3 0.0 0.0 0.0 0.10093275616668751 0.0 4 0.0 0.0 0.0 0.1462678045929884 0.0 5 0.0 0.0 0.0 0.23748590752546858 0.0 6 0.0 0.0 0.0 0.3193879071000166 0.0 7 0.0 0.0 0.0 0.3796685758866365 0.0 8 0.0 0.0 0.0 0.5289753232862231 0.0 9 0.0 0.0 0.0 0.5797904325113076 0.0 10 0.0 0.0 0.0 0.660347326253427 0.0 11 0.0 0.0 0.0 0.7650663062447286 0.0 12 0.0 0.0 0.0 0.8608179140198389 0.0 13 0.0 0.0 0.0 0.9182090962034637 0.0 14 0.0 0.0 0.0 0.9466555936226042 0.0 15 0.0 0.0 0.0 0.9725115168459559 0.0 16 0.0 0.0 0.0 1.0250702817797444 0.0 17 0.0 0.0 0.0 1.085948775380777 0.0 18 0.0 0.0 0.0 1.1933081483024017 0.0 19 0.0 0.0 0.0 1.2354547977185013 0.0 20 0.0 0.0 0.0 1.278896734232495 0.0 21 0.0 0.0 0.0 1.3497887934749415 0.0 22 0.0 0.0 0.0 1.4091727250399422 0.0 23 0.0 0.0 0.0 1.4982486223874434 0.0 24 0.0 0.0 0.0 1.5533979615170204 0.0 25 0.0 0.0 0.0 1.596192254482067 0.0 26 0.0 0.0 0.0 1.6541812614801046 0.0 27 0.0 0.0 0.0 1.6996159473754744 0.0 28 0.0 0.0 0.0 1.7480397573429078 0.0 29 0.0 0.0 0.0 1.8042851086322416 0.0 30 0.0 0.0 0.0 1.8971970485388912 0.0 31 0.0 0.0 0.0 1.9988770857235947 0.0 32 0.0 0.0 0.0 2.070765519656729 0.0 33 0.0 0.0 0.0 2.1405117480048843 0.0 34 0.0 0.0 0.0 2.222911934924776 0.0 35 0.0 0.0 0.0 2.3681833648270767 0.0 36 0.0 0.0 0.0 2.4551668753241334 0.0 37 0.0 0.0 0.0 2.5519148577899315 0.0 38 0.0 0.0 0.0 2.626144772246182 0.0 39 0.0 0.0 0.0 2.7104380710783813 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTTGCG 85 0.0 45.000004 1 AGAGTAC 75 0.0 45.000004 10 GTTACGG 85 0.0 45.000004 2 CGTAGTT 85 0.0 45.000004 14 GTATGCG 150 0.0 45.000004 1 TGTTCGG 125 0.0 45.000004 2 ACGTGAG 85 0.0 45.000004 1 GCGATGA 105 0.0 45.000004 9 TCGTAGT 85 0.0 45.000004 13 TGCTACG 150 0.0 45.000004 1 CTTGTAG 80 0.0 45.0 1 CGGAACT 40 6.8193913E-9 45.0 23 AATCCCG 45 3.8562575E-10 45.0 2 ACCGGTG 40 6.8193913E-9 45.0 19 AAATCGA 40 6.8193913E-9 45.0 26 TCGCAAG 225 0.0 45.0 1 TACCCAA 55 1.8189894E-12 45.0 39 ACACGAT 20 7.0345466E-4 45.0 39 GCGACAA 35 1.2125383E-7 45.0 1 GTCGATA 25 3.8918504E-5 45.0 9 >>END_MODULE