SRR1545097_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545097_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1779873
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5683	0.3192924438990872	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2900	0.16293297330764608	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2264	0.12720008674776234	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	1987	0.11163717860768717	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1874	0.10528841102707891	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1787	0.1004004218278495	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	75	0.0	45.000004	1
AAGCGAA	45	3.8562575E-10	45.000004	24
ATCGTAC	45	3.8562575E-10	45.000004	29
TATCTCG	45	3.8562575E-10	45.000004	1
GTTCGAC	45	3.8562575E-10	45.000004	23
TATTACG	45	3.8562575E-10	45.000004	1
CGTACTC	45	3.8562575E-10	45.000004	31
TCGTACT	45	3.8562575E-10	45.000004	30
TGCGTTG	90	0.0	45.000004	1
CGGGTTC	20	7.0343306E-4	45.0	6
GTGCAGT	20	7.0343306E-4	45.0	23
TATCACG	20	7.0343306E-4	45.0	1
CATGGAC	25	3.8916718E-5	45.0	14
CAGCGCG	35	1.2124292E-7	45.0	1
AACCGAT	25	3.8916718E-5	45.0	14
CCGGGTC	35	1.2124292E-7	45.0	5
GCAAGTA	25	3.8916718E-5	45.0	9
CATATCG	25	3.8916718E-5	45.0	1
GGTAATC	80	0.0	45.0	8
ATAGGCG	20	7.0343306E-4	45.0	4