SRR1545096_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545096_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1889142
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6922	0.36640972462631183	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3374	0.1785995970657579	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3201	0.1694420006542653	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2878	0.1523442917472588	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2056	0.10883247527184298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGC	20	7.03444E-4	45.000004	13
AATCCCG	20	7.03444E-4	45.000004	42
ACACGCG	20	7.03444E-4	45.000004	36
CATATCG	20	7.03444E-4	45.000004	27
AGTTTCG	20	7.03444E-4	45.000004	1
CAAGTCG	20	7.03444E-4	45.000004	1
CGAGTGT	50	2.1827873E-11	45.000004	15
GATCGAC	20	7.03444E-4	45.000004	32
CAACGAA	20	7.03444E-4	45.000004	17
ACGTTGA	25	3.891762E-5	45.000004	16
ACGTTCA	40	6.8193913E-9	45.000004	37
GCGGTAT	20	7.03444E-4	45.000004	39
ACGCACT	25	3.891762E-5	45.000004	30
GACAACG	20	7.03444E-4	45.000004	15
ATTCGTC	30	2.1662472E-6	45.000004	14
ATTCGAA	60	0.0	45.000004	42
CCGTCGC	60	0.0	45.000004	20
ATCGTAC	20	7.03444E-4	45.000004	37
CGTTAGC	20	7.03444E-4	45.000004	14
ACGATTC	20	7.03444E-4	45.000004	42