SRR1545095_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545095_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3638079
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11312	0.3109333249772751	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6471	0.17786859493705331	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3855	0.10596251483269055	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3799	0.10442324094666444	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3716	0.1021418171513043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	70	0.0	45.000004	1
ACTTACG	30	2.1668038E-6	45.000004	1
CCGTATC	30	2.1668038E-6	45.000004	38
CACTACG	30	2.1668038E-6	45.000004	1
TGCGAGC	70	0.0	45.000004	18
TCGAGTA	30	2.1668038E-6	45.000004	1
TCGACAG	60	0.0	45.000004	1
TATGTCG	30	2.1668038E-6	45.000004	24
GTGCACG	45	3.8562575E-10	45.0	1
CGGGTAC	45	3.8562575E-10	45.0	6
AGTTTCG	25	3.8924773E-5	45.0	1
TGCCATA	50	2.1827873E-11	45.0	3
CTCCGAC	25	3.8924773E-5	45.0	39
TGGACCG	25	3.8924773E-5	45.0	44
CATTGCG	40	6.8212103E-9	45.0	1
ATTACCG	155	0.0	45.0	1
TTCACGG	145	0.0	45.0	2
GGTCCGT	20	7.035303E-4	45.0	8
TTGTACG	180	0.0	45.0	1
TAGCCGA	25	3.8924773E-5	45.0	19