SRR1545093_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545093_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4796635
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22920	0.47783498223233584	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	14678	0.3060061897559435	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	12961	0.27021026198574627	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	11232	0.23416415883218128	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8838	0.18425416985032214	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	8101	0.16888923172182166	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6004	0.12517108347831343	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5693	0.11868737145936682	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	5651	0.11781175761757982	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5620	0.11716547121054656	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	20	7.0355274E-4	45.000004	22
ATCGTAG	20	7.0355274E-4	45.000004	1
ACTACGC	75	0.0	45.000004	12
AACCGGT	50	2.1827873E-11	45.0	31
TACGCGA	25	3.892665E-5	45.0	25
CCGAATA	45	3.8562575E-10	45.0	19
CGATATA	45	3.8562575E-10	45.0	10
CGGCATA	65	0.0	44.999996	5
CGCGATT	30	2.1669493E-6	44.999996	27
CGTAGAT	30	2.1669493E-6	44.999996	44
ATACCGG	30	2.1669493E-6	44.999996	2
GTACGTC	55	1.8189894E-12	44.999996	40
TACGTCC	55	1.8189894E-12	44.999996	41
TACCGCG	30	2.1669493E-6	44.999996	1
CGGGTAT	410	0.0	44.451218	6
AATACGG	275	0.0	44.18182	2
TCGACAG	210	0.0	43.92857	1
TCGTTAG	185	0.0	43.783783	1
GCTACGA	690	0.0	43.695652	10
CGGTCTA	265	0.0	43.301888	31