SRR1545091_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545091_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4587335
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11727	0.25563862242456675	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8156	0.17779386070561665	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7469	0.1628178452195011	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5917	0.12898556569337097	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5623	0.12257661583468396	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	5524	0.12041850006594243	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4757	0.10369855264549024	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4704	0.10254319773899224	No Hit
TATAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	4597	0.10021068877681703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCC	100	0.0	45.000004	39
CTCACGA	90	0.0	45.000004	24
ACGCCCA	25	3.8926366E-5	45.000004	29
GTCGAAA	25	3.8926366E-5	45.000004	41
TCACACG	90	0.0	45.000004	1
CCGGCAT	20	7.0354954E-4	45.000004	31
CATTGCG	45	3.8562575E-10	45.000004	1
CTATACG	20	7.0354954E-4	45.000004	1
CCTACGC	45	3.8562575E-10	45.000004	28
TAACGCG	20	7.0354954E-4	45.000004	1
TCTAGCG	90	0.0	45.000004	1
TCGGAGC	20	7.0354954E-4	45.000004	39
GCCGAAT	25	3.8926366E-5	45.000004	35
GCGATAC	250	0.0	45.000004	9
TCCGTCA	50	2.1827873E-11	45.000004	18
ACCACGG	45	3.8562575E-10	45.000004	2
CATCGTA	20	7.0354954E-4	45.000004	1
ATGCGTA	45	3.8562575E-10	45.000004	29
CAGTCGT	40	6.8230293E-9	45.000004	17
ATCGGCA	20	7.0354954E-4	45.000004	11