SRR1545088_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545088_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2329382
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6386	0.2741499676738294	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2941	0.1262566637846433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	100	0.0	45.000004	2
CTATGCG	85	0.0	45.000004	1
ATCTACG	25	3.892043E-5	45.000004	1
CAACGTA	25	3.892043E-5	45.000004	27
GCGCGTC	25	3.892043E-5	45.000004	38
CGTGACG	25	3.892043E-5	45.000004	19
TCGATAG	75	0.0	45.000004	1
ACGGGCC	25	3.892043E-5	45.000004	5
TATTGCG	270	0.0	45.000004	1
ATTCCCG	25	3.892043E-5	45.000004	45
CCCGTAA	25	3.892043E-5	45.000004	20
TCGTGAC	25	3.892043E-5	45.000004	18
TCTACGA	25	3.892043E-5	45.000004	12
GTATGCG	25	3.892043E-5	45.000004	1
AACGCTC	25	3.892043E-5	45.000004	44
CGCGTCA	25	3.892043E-5	45.000004	39
CGACTCC	25	3.892043E-5	45.000004	23
CGCTTCG	25	3.892043E-5	45.000004	32
TGATCGC	20	7.03478E-4	45.0	21
TTGATCG	20	7.03478E-4	45.0	40