SRR1545087_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545087_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2423760
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8529	0.3518912763639965	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8169	0.3370383206258045	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7553	0.31162326302934285	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6926	0.2857543651186586	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3691	0.15228405452685084	No Hit
GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2845	0.11737960854209988	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2841	0.1172145757005644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	60	0.0	45.000004	6
TCGTTGC	50	2.1827873E-11	45.000004	12
CGTGAAT	30	2.1665019E-6	45.000004	25
GAGTACG	25	3.89209E-5	45.000004	1
TAGCGAA	30	2.1665019E-6	45.000004	1
CCGTGTC	25	3.89209E-5	45.000004	39
CCTGTCG	25	3.89209E-5	45.000004	18
ACGATAT	50	2.1827873E-11	45.000004	25
CTAACGG	25	3.89209E-5	45.000004	2
CCGTACA	25	3.89209E-5	45.000004	33
TACGCAT	25	3.89209E-5	45.000004	23
GTTAACG	100	0.0	45.000004	1
ACGGATC	25	3.89209E-5	45.000004	33
ACCACGG	30	2.1665019E-6	45.000004	2
ATGCGTA	25	3.89209E-5	45.000004	26
TTCGGAC	25	3.89209E-5	45.000004	33
CAGTACG	60	0.0	45.000004	1
AGTAGCG	30	2.1665019E-6	45.000004	1
TATGTCG	25	3.89209E-5	45.000004	1
CCGTTAG	30	2.1665019E-6	45.000004	1