SRR1545085_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545085_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3499710
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15566	0.44477971031885494	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	11637	0.33251326538484616	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	10444	0.2984247266202057	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6931	0.1980449808698435	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5577	0.15935606093076285	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	5078	0.14509773666960976	No Hit
TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4098	0.11709541647736527	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4036	0.11532384111826409	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3970	0.11343797057470477	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3688	0.10538016007040583	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	3637	0.10392289646856454	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	30	2.1667802E-6	45.000004	6
CGACGAA	30	2.1667802E-6	45.000004	32
CGGCATA	20	7.0352654E-4	45.000004	26
CAACCGT	35	1.212884E-7	45.000004	20
TTCGTCA	20	7.0352654E-4	45.000004	13
CGCGATT	20	7.0352654E-4	45.000004	28
TACGACA	20	7.0352654E-4	45.000004	30
TCGTCAA	20	7.0352654E-4	45.000004	14
ACTAACG	35	1.212884E-7	45.000004	26
TAGTCCG	35	1.212884E-7	45.000004	1
GCGTAAA	40	6.8212103E-9	45.000004	1
AACCCGT	25	3.8924467E-5	45.0	44
CGCATTA	25	3.8924467E-5	45.0	14
CGTTCGA	25	3.8924467E-5	45.0	14
CAAGTCG	65	0.0	44.999996	1
GCAACCG	115	0.0	44.999996	1
TGTAGCG	170	0.0	43.676468	1
AGTACGG	450	0.0	43.5	2
CGAGGGT	410	0.0	43.35366	4
TAGTACG	265	0.0	43.301888	1