SRR1545084_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545084_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1435900
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9871	0.6874434152796155	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3733	0.25997632147085453	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2402	0.16728184413956404	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1848	0.12869977017898182	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1717	0.11957657218469252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	25	3.891292E-5	45.000004	1
GTTAGCG	100	0.0	45.000004	1
CGAATTA	25	3.891292E-5	45.000004	41
GTATCGT	25	3.891292E-5	45.000004	16
TCGAGAG	50	2.1827873E-11	45.000004	1
ATACGTT	25	3.891292E-5	45.000004	36
TCGACCA	25	3.891292E-5	45.000004	37
CGTTTAC	25	3.891292E-5	45.000004	33
TCGGTAT	25	3.891292E-5	45.000004	35
GCGTAAG	100	0.0	45.000004	1
TGCGTGA	25	3.891292E-5	45.000004	40
TAATCCG	25	3.891292E-5	45.000004	1
CTATGCG	70	0.0	45.0	1
TAGCGAT	20	7.0338754E-4	45.0	37
CCTACGC	20	7.0338754E-4	45.0	13
CTAAGCG	35	1.2122109E-7	45.0	1
AAACGCC	35	1.2122109E-7	45.0	11
AATGCGT	20	7.0338754E-4	45.0	38
ACGGCAC	20	7.0338754E-4	45.0	35
GTTCGAA	40	6.8175723E-9	45.0	15