SRR1545082_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545082_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1043987
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3029	0.29013771244277947	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2895	0.27730230357274566	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1426	0.1365917391691659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	75	0.0	45.000004	1
AGTCAAG	55	1.8189894E-12	45.000004	1
CGCTAGG	55	1.8189894E-12	45.000004	2
GCTACTG	55	1.8189894E-12	45.000004	1
GATTACG	55	1.8189894E-12	45.000004	1
CGGGTTG	45	3.8562575E-10	45.0	6
CGGGTCA	25	3.8905586E-5	45.0	6
AAGTACG	40	6.8139343E-9	45.0	1
TCGTTTG	50	2.1827873E-11	45.0	1
AATCCGG	70	0.0	45.0	2
ACAGTAC	35	1.2117926E-7	45.0	16
TCGCAAG	25	3.8905586E-5	45.0	1
GTCGATG	45	3.8562575E-10	45.0	1
TGCCATT	20	7.03299E-4	45.0	37
CACGGGC	35	1.2117926E-7	45.0	4
CAACGGT	25	3.8905586E-5	45.0	41
CAACGCG	45	3.8562575E-10	45.0	1
AGATAAC	20	7.03299E-4	45.0	45
CTATACG	40	6.8139343E-9	45.0	1
CGTGAAT	45	3.8562575E-10	45.0	9