SRR1545080_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545080_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2239214
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9137	0.4080449657781704	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4451	0.19877510590769798	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3115	0.13911131316613776	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3083	0.13768224028610038	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2443	0.10910078268535298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	20	7.03472E-4	45.000004	39
CCTTACG	20	7.03472E-4	45.000004	1
TTTACGC	20	7.03472E-4	45.000004	12
CGACGGA	20	7.03472E-4	45.000004	18
GACCGTA	20	7.03472E-4	45.000004	17
GTAGCAC	45	3.8562575E-10	45.000004	14
TTGCGTG	20	7.03472E-4	45.000004	3
TCCGTTG	20	7.03472E-4	45.000004	43
ACGCTAG	45	3.8562575E-10	45.000004	1
CGAGACG	40	6.8193913E-9	45.000004	33
GCTACGC	45	3.8562575E-10	45.000004	10
GGTTCGC	20	7.03472E-4	45.000004	9
ACTCGAC	35	1.2126111E-7	45.0	10
CAATGCG	85	0.0	45.0	1
GTACGCG	35	1.2126111E-7	45.0	1
ATCTACG	50	2.1827873E-11	44.999996	1
CGACGGT	110	0.0	44.999996	28
CGTTGTC	65	0.0	44.999996	3
CTATACG	30	2.166429E-6	44.999996	1
ACCGAGT	30	2.166429E-6	44.999996	21