SRR1545079_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545079_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3318267
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15783	0.47563984453330604	No Hit
GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAAG	3374	0.10167958154060538	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3360	0.10125767456325849	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	30	2.1667456E-6	45.000004	14
ACGGGTA	250	0.0	45.000004	5
CGTTACC	60	0.0	45.000004	42
TACGAGT	45	3.8562575E-10	45.000004	29
CTCGACG	45	3.8562575E-10	45.000004	1
TTACGCG	60	0.0	45.000004	1
GCTCGAT	30	2.1667456E-6	45.000004	38
TGCAACG	45	3.8562575E-10	45.000004	1
TCGTTAG	85	0.0	45.0	1
TCCGATT	95	0.0	45.0	43
GCAACGA	20	7.0352136E-4	45.0	20
GCACGTT	25	3.8924038E-5	45.0	36
TACGCCT	20	7.0352136E-4	45.0	4
GTATCGA	40	6.8212103E-9	45.0	45
TAGTGCA	35	1.2128476E-7	45.0	17
TAGTCCG	70	0.0	45.0	1
TACCGCG	35	1.2128476E-7	45.0	1
AAGTCGC	40	6.8212103E-9	45.0	42
CGGCGTA	65	0.0	44.999996	21
TTACGTG	260	0.0	44.134613	1