SRR1545078_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545078_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1585489
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5689	0.35881674360402377	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5551	0.350112804314631	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5241	0.33056047692541546	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5083	0.3205950971592991	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1661	0.10476263159189374	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCACGG	165	0.0	45.000004	2
GCATAAC	20	7.034098E-4	45.0	13
CTTCGAC	25	3.8914783E-5	45.0	23
GATACCC	25	3.8914783E-5	45.0	8
TCGTTAA	25	3.8914783E-5	45.0	30
TCGCACG	40	6.8175723E-9	45.0	1
AAATCGG	45	3.8562575E-10	45.0	2
AGTTTCG	25	3.8914783E-5	45.0	36
CTCCGCG	35	1.21232E-7	45.0	1
GCGAATG	35	1.21232E-7	45.0	1
CCTAGCG	20	7.034098E-4	45.0	1
TAGCGTC	20	7.034098E-4	45.0	12
CTATACG	25	3.8914783E-5	45.0	1
CGGTTCG	20	7.034098E-4	45.0	30
CGTGAAT	35	1.21232E-7	45.0	23
AGCTTCG	25	3.8914783E-5	45.0	1
TAGAACG	40	6.8175723E-9	45.0	1
TCGGGTA	25	3.8914783E-5	45.0	27
GCACGCA	20	7.034098E-4	45.0	9
CCTACGG	20	7.034098E-4	45.0	2