FastQCFastQC Report
Thu 26 May 2016
SRR1545078_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545078_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1585489
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG56890.35881674360402377No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55510.350112804314631No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG52410.33056047692541546No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG50830.3205950971592991No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA16610.10476263159189374No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCACGG1650.045.0000042
GCATAAC207.034098E-445.013
CTTCGAC253.8914783E-545.023
GATACCC253.8914783E-545.08
TCGTTAA253.8914783E-545.030
TCGCACG406.8175723E-945.01
AAATCGG453.8562575E-1045.02
AGTTTCG253.8914783E-545.036
CTCCGCG351.21232E-745.01
GCGAATG351.21232E-745.01
CCTAGCG207.034098E-445.01
TAGCGTC207.034098E-445.012
CTATACG253.8914783E-545.01
CGGTTCG207.034098E-445.030
CGTGAAT351.21232E-745.023
AGCTTCG253.8914783E-545.01
TAGAACG406.8175723E-945.01
TCGGGTA253.8914783E-545.027
GCACGCA207.034098E-445.09
CCTACGG207.034098E-445.02