SRR1545077_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545077_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3440984
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11924	0.346528783627009	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	7017	0.2039242263259579	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6359	0.18480178925563154	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5692	0.16541779909467758	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4592	0.13345019912908632	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3940	0.11450213078584498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCTT	35	1.2128658E-7	45.000004	8
GTTACGC	35	1.2128658E-7	45.000004	35
CTACCGT	35	1.2128658E-7	45.000004	38
TTACGCG	35	1.2128658E-7	45.000004	1
TCGAACG	35	1.2128658E-7	45.000004	1
GCATAAC	20	7.035251E-4	45.0	9
TCACGAC	135	0.0	45.0	25
TATCACG	80	0.0	45.0	1
AACCGTG	20	7.035251E-4	45.0	1
ATAGCGG	595	0.0	45.0	2
CCTGTCG	20	7.035251E-4	45.0	10
CACTGCG	45	3.8562575E-10	45.0	1
TAGTTCG	80	0.0	45.0	1
ATCCGAT	25	3.892434E-5	45.0	6
CATAGCG	25	3.892434E-5	45.0	1
TCGTCAC	90	0.0	45.0	18
CGGTCAG	40	6.8212103E-9	45.0	13
TAAGCGA	80	0.0	45.0	1
CGATATC	45	3.8562575E-10	45.0	10
TAGTCCG	40	6.8212103E-9	45.0	1