SRR1545076_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545076_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1419324
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4058	0.2859107575155497	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2675	0.18847000403008757	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1474	0.10385225642629871	No Hit
ATGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1433	0.10096355729910858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACAGTC	35	1.2121927E-7	45.0	9
CGTATGG	145	0.0	45.0	2
CTACTCG	35	1.2121927E-7	45.0	1
CACGGTG	20	7.0338475E-4	45.0	4
CGACGGT	85	0.0	45.0	28
CAGCCTC	20	7.0338475E-4	45.0	20
CCTAGGC	20	7.0338475E-4	45.0	32
GCAACAT	35	1.2121927E-7	45.0	9
ATCAGCG	40	6.8175723E-9	45.0	1
TAGCGCC	20	7.0338475E-4	45.0	13
TAGCGAG	70	0.0	45.0	1
GCACGGT	20	7.0338475E-4	45.0	3
GCACGAT	20	7.0338475E-4	45.0	9
GCACGAG	20	7.0338475E-4	45.0	1
TTGTACC	20	7.0338475E-4	45.0	45
AGGGTGC	75	0.0	45.0	6
TGAGTCG	40	6.8175723E-9	45.0	1
CACGAAG	35	1.2121927E-7	45.0	1
TAACGCA	40	6.8175723E-9	45.0	40
ATGTCGT	20	7.0338475E-4	45.0	24