FastQCFastQC Report
Thu 26 May 2016
SRR1545076_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545076_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1419324
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40580.2859107575155497No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT26750.18847000403008757No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14740.10385225642629871No Hit
ATGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA14330.10096355729910858No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACAGTC351.2121927E-745.09
CGTATGG1450.045.02
CTACTCG351.2121927E-745.01
CACGGTG207.0338475E-445.04
CGACGGT850.045.028
CAGCCTC207.0338475E-445.020
CCTAGGC207.0338475E-445.032
GCAACAT351.2121927E-745.09
ATCAGCG406.8175723E-945.01
TAGCGCC207.0338475E-445.013
TAGCGAG700.045.01
GCACGGT207.0338475E-445.03
GCACGAT207.0338475E-445.09
GCACGAG207.0338475E-445.01
TTGTACC207.0338475E-445.045
AGGGTGC750.045.06
TGAGTCG406.8175723E-945.01
CACGAAG351.2121927E-745.01
TAACGCA406.8175723E-945.040
ATGTCGT207.0338475E-445.024