SRR1545074_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545074_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1487908
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4030	0.2708500794403955	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2978	0.20014678326885801	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2444	0.1642574675315947	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1775	0.1192950101753603	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1515	0.1018208115017864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGGTCG	45	3.8562575E-10	45.000004	1
TCGTTAG	90	0.0	45.000004	1
TACGGCA	45	3.8562575E-10	45.000004	42
TCGATAG	65	0.0	45.000004	1
ATATCGG	55	1.8189894E-12	45.000004	2
TCGGACG	45	3.8562575E-10	45.000004	1
AGTTGTA	45	3.8562575E-10	45.000004	34
TACGACG	45	3.8562575E-10	45.000004	1
TCGTCAG	65	0.0	45.000004	1
AACGACG	55	1.8189894E-12	45.000004	1
ACTCGAT	55	1.8189894E-12	45.000004	23
CTCGATT	55	1.8189894E-12	45.000004	24
AATTACG	45	3.8562575E-10	45.000004	1
TTACGAG	65	0.0	45.000004	1
TCGAGAG	55	1.8189894E-12	45.000004	1
TGAATCG	45	3.8562575E-10	45.000004	1
GCGTCAG	55	1.8189894E-12	45.000004	1
AATCGTG	55	1.8189894E-12	45.000004	1
ACGCGAG	40	6.8175723E-9	45.0	1
TCACGAC	35	1.2122473E-7	45.0	25