SRR1545073_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545073_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1580028
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6609	0.418283726617503	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5393	0.3413230651608706	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5058	0.3201209092497095	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3969	0.2511980800340247	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3117	0.19727498500026583	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1962	0.12417501461999408	No Hit
TAGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1745	0.11044108079097331	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	30	2.1660198E-6	45.000004	41
AGTTTCG	30	2.1660198E-6	45.000004	1
AGTCACG	30	2.1660198E-6	45.000004	1
CATGCGT	30	2.1660198E-6	45.000004	35
CCATGCG	30	2.1660198E-6	45.000004	34
CTACGTG	30	2.1660198E-6	45.000004	1
CGGATAT	30	2.1660198E-6	45.000004	22
GTACTCG	30	2.1660198E-6	45.000004	1
ACGCTCT	30	2.1660198E-6	45.000004	18
CACGTAG	30	2.1660198E-6	45.000004	1
TATACGT	30	2.1660198E-6	45.000004	25
TGATCGC	25	3.8914724E-5	45.0	28
TTTAGCG	45	3.8562575E-10	45.0	1
AACGTAG	25	3.8914724E-5	45.0	1
GATCGAC	20	7.034091E-4	45.0	9
GTACAAC	20	7.034091E-4	45.0	30
GGTCGAA	20	7.034091E-4	45.0	9
CACGGAT	25	3.8914724E-5	45.0	4
CGCGGCT	20	7.034091E-4	45.0	19
ACGTTGT	20	7.034091E-4	45.0	32