SRR1545067_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545067_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3167247
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10030	0.316678806547137	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4792	0.15129858833239088	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4442	0.14024798192247084	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4201	0.13263885008021162	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3985	0.1258190472672324	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3529	0.11142168577316515	No Hit
TTTGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	3478	0.10981145455343394	No Hit
TTGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	3301	0.10422300502613152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	60	0.0	45.000004	1
GTACCTA	30	2.1667147E-6	45.000004	17
CGTATAA	35	1.2128294E-7	45.000004	28
GATCGGT	95	0.0	45.000004	9
TAGACGC	65	0.0	45.000004	44
ATGTGCG	120	0.0	45.000004	1
ATTACGA	35	1.2128294E-7	45.000004	12
TCGATTG	70	0.0	45.000004	1
TGCGGGT	95	0.0	45.000004	4
TAGCCGT	30	2.1667147E-6	45.000004	44
ACGGGCC	70	0.0	45.000004	5
TACGCGT	35	1.2128294E-7	45.000004	24
TGTCTGC	35	1.2128294E-7	45.000004	39
GTATGCG	155	0.0	45.000004	1
CTACGCT	35	1.2128294E-7	45.000004	41
CTACGAT	35	1.2128294E-7	45.000004	14
TGACACG	130	0.0	45.000004	1
ACTACGA	35	1.2128294E-7	45.000004	13
ATCCATG	30	2.1667147E-6	45.000004	1
TATTACG	95	0.0	45.000004	1