SRR1545066_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545066_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3299742
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16530	0.5009482559545564	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6763	0.204955417726598	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5676	0.1720134483241417	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4208	0.12752512166102684	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3928	0.11903960976343	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3316	0.10049270518725405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	65	0.0	45.000004	14
TCTAGCG	90	0.0	45.000004	1
CGTAGAT	30	2.166742E-6	45.000004	17
ATCGATA	45	3.8562575E-10	45.000004	15
ATAGCCG	55	1.8189894E-12	45.0	1
ACCGAAC	40	6.8212103E-9	45.0	11
CCGTACT	20	7.035208E-4	45.0	43
TACGCGA	35	1.2128476E-7	45.0	21
CGGATTA	20	7.035208E-4	45.0	38
GTTCACG	25	3.8923987E-5	45.0	44
CGTCGGT	20	7.035208E-4	45.0	39
TTACGAG	140	0.0	45.0	1
ACCAACG	20	7.035208E-4	45.0	38
TGGTCGA	80	0.0	45.0	10
TATTGCG	300	0.0	44.25	1
GTTTACG	85	0.0	42.35294	1
CTACGGG	425	0.0	42.35294	3
GTATGCG	85	0.0	42.35294	1
CGAGTAC	80	0.0	42.1875	40
ATGCTCG	160	0.0	42.1875	1