##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545056_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5066703 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.95158212352293 31.0 31.0 33.0 30.0 34.0 2 31.23191925794743 31.0 31.0 34.0 28.0 34.0 3 31.308203184595584 31.0 31.0 34.0 28.0 34.0 4 35.14418903180234 35.0 35.0 37.0 32.0 37.0 5 35.00731955277426 35.0 35.0 37.0 32.0 37.0 6 35.06747188457662 37.0 35.0 37.0 32.0 37.0 7 35.59716249403211 37.0 35.0 37.0 35.0 37.0 8 35.52111738146088 37.0 35.0 37.0 35.0 37.0 9 37.21921336221997 39.0 37.0 39.0 34.0 39.0 10 36.602660349343545 39.0 35.0 39.0 32.0 39.0 11 36.313732026526914 38.0 35.0 39.0 32.0 39.0 12 35.567910532746836 37.0 35.0 39.0 30.0 39.0 13 35.09055750850208 37.0 34.0 39.0 30.0 39.0 14 36.09857949044971 38.0 35.0 40.0 30.0 41.0 15 36.44341359657355 38.0 35.0 40.0 31.0 41.0 16 36.53606734004342 38.0 35.0 40.0 31.0 41.0 17 36.4270181220411 38.0 35.0 40.0 31.0 41.0 18 36.363779957104256 38.0 35.0 40.0 31.0 41.0 19 36.27039615308022 37.0 35.0 40.0 31.0 41.0 20 36.12617652939199 37.0 34.0 40.0 30.0 41.0 21 35.95310224420101 37.0 34.0 40.0 30.0 41.0 22 35.85058488725311 37.0 34.0 40.0 30.0 41.0 23 35.82186009324012 37.0 34.0 40.0 30.0 41.0 24 35.724604935398816 37.0 34.0 40.0 30.0 41.0 25 35.580676428044036 36.0 34.0 40.0 29.0 41.0 26 35.44081900991631 36.0 34.0 40.0 29.0 41.0 27 35.346057189458314 36.0 34.0 40.0 29.0 41.0 28 35.350033739889625 36.0 34.0 40.0 29.0 41.0 29 35.37723407115041 36.0 34.0 40.0 29.0 41.0 30 35.278378464259696 36.0 34.0 40.0 29.0 41.0 31 35.103843465859356 36.0 34.0 40.0 28.0 41.0 32 34.88346386200257 36.0 34.0 40.0 27.0 41.0 33 34.650523624534536 36.0 33.0 40.0 25.0 41.0 34 34.498912803848974 36.0 33.0 40.0 25.0 41.0 35 34.322363477788215 36.0 33.0 40.0 24.0 41.0 36 34.14460922615752 36.0 33.0 40.0 23.0 41.0 37 34.099119091843356 36.0 33.0 40.0 23.0 41.0 38 34.064949534243475 36.0 33.0 40.0 23.0 41.0 39 34.01579172886194 36.0 33.0 40.0 23.0 41.0 40 33.84504144016336 35.0 33.0 40.0 23.0 41.0 41 33.809558405140386 35.0 33.0 40.0 23.0 41.0 42 33.76646252997265 35.0 33.0 40.0 23.0 41.0 43 33.647178056420515 35.0 33.0 40.0 23.0 41.0 44 33.57215293653486 35.0 32.0 40.0 23.0 41.0 45 33.51347335732921 35.0 32.0 39.0 23.0 41.0 46 33.460429790339006 35.0 32.0 39.0 23.0 41.0 47 33.381724367897625 35.0 32.0 39.0 23.0 41.0 48 33.33520713568567 35.0 32.0 39.0 23.0 41.0 49 33.35168471489251 35.0 32.0 39.0 23.0 41.0 50 33.24559185726892 35.0 32.0 39.0 22.0 41.0 51 33.07788259939452 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 5.0 12 13.0 13 13.0 14 50.0 15 170.0 16 574.0 17 1485.0 18 3413.0 19 6843.0 20 11834.0 21 18939.0 22 27799.0 23 40092.0 24 56083.0 25 78369.0 26 101303.0 27 118360.0 28 128804.0 29 142748.0 30 167144.0 31 202137.0 32 247535.0 33 315350.0 34 492667.0 35 656102.0 36 385351.0 37 463947.0 38 609016.0 39 790227.0 40 328.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.26650486519537 23.180715348817564 27.963865259124127 15.588914526862933 2 33.08405880510462 25.287608134915345 29.013739309369424 12.614593750610602 3 29.83022687534675 24.798927428744097 32.43509635358536 12.935749342323795 4 27.281231996428446 26.955536963583615 30.91742302637435 14.845808013613587 5 23.135103833794876 32.048158338864546 30.83940384901187 13.977333978328707 6 21.13778920927475 40.18035002248997 28.303711506279328 10.37814926195595 7 84.90807533024928 4.558684414697289 8.793232995894963 1.7400072591584703 8 85.69847097806996 4.131345373904884 8.388571424060183 1.7816122239649728 9 81.00249807419144 5.559670657624889 10.2373081666717 3.200523101511969 10 47.02786012916091 24.542054270795035 16.02900347622507 12.40108212381898 11 41.58199128703616 22.227037977161874 22.174913350950312 14.01605738485165 12 37.65124973774859 20.81783755629647 26.98851699024 14.542395715714934 13 21.472207863772557 35.68438884221159 26.91397147217826 15.929431821837595 14 16.106884496683545 38.61126259028801 29.911147347693362 15.370705565335092 15 15.51582952464354 23.100347504086976 45.97103876031415 15.41278421095533 16 17.761648946070057 18.18509985684971 44.68908084803866 19.364170349041576 17 17.67849822655877 18.439367770323226 30.886416669775198 32.9957173333428 18 21.49034589159854 22.848467731382716 35.100893026490795 20.560293350527946 19 29.13810025967577 22.827487618674315 27.48144108703431 20.55297103461561 20 30.308407656813515 22.635232418399102 26.876965158605117 20.17939476618227 21 23.548844287892937 26.732788560924135 29.990646777598766 19.727720373584162 22 22.798731245940406 23.248550388684713 27.5879995334244 26.36471883195048 23 20.97186276756305 28.786925146392043 26.336633507036034 23.904578579008877 24 20.098316400231077 23.78517154054619 37.35965972349277 18.756852335729963 25 19.759062254093045 23.888078697330396 35.36698322360714 20.985875824969412 26 18.296908265592045 31.23723652244862 29.020449787564022 21.44540542439531 27 19.411202906505473 31.696706911772804 29.26932958178129 19.622760599940435 28 17.503729742990657 28.221073940982922 36.99907020403604 17.27612611199038 29 18.01522607502354 25.419271664433456 35.65059961083174 20.914902649711262 30 20.053356196327275 28.48783518591873 32.33737994905168 19.121428668702308 31 28.764721358248153 26.122371885622663 25.98488602943571 19.128020726693475 32 29.076936224602072 25.903728716682227 27.795155942631727 17.22417911608397 33 27.280047794394108 26.463836542224794 25.85089356925006 20.405222094131034 34 20.517898917698552 28.238047503475137 28.500506147686178 22.743547431140133 35 21.200394023490226 24.51308079435483 31.60240495643814 22.684120225716804 36 29.26546118846911 25.923129893344843 26.185114856742146 18.6262940614439 37 21.311649804616533 31.691160898911974 28.52726911366228 18.469920182809215 38 21.748482198384238 32.300531529083116 24.259404981898484 21.691581290634165 39 22.09417050890885 29.928594590999314 26.430007837443796 21.547227062648037 40 23.9519466603825 25.497961889615397 27.738353718384516 22.811737731617583 41 18.71822761270988 25.379344319175605 28.22863309730213 27.67379497081238 42 22.192202700651688 26.475007514748743 25.173451058804908 26.15933872579466 43 22.692745163866917 25.86030797542307 26.7707817095259 24.67616515118411 44 20.699930507077287 28.531867764895637 29.102218938035247 21.665982789991837 45 19.461551229665524 34.50993673795366 24.623882631367973 21.404629401012848 46 21.97758581862801 31.33258452291362 27.20441675780088 19.48541290065749 47 22.390832855211762 28.101410325412797 27.03511534029131 22.47264147908413 48 22.626291693039832 26.512388825632765 30.14421804475218 20.717101436575224 49 21.84550781839788 25.54675101343023 31.5529053114027 21.054835856769184 50 20.27225594237515 31.39329461387415 28.186436031478458 20.148013412272242 51 19.70133240491894 32.251387144657976 26.073720918711835 21.973559531711253 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3882.0 1 6425.5 2 8969.0 3 32997.5 4 57026.0 5 42556.5 6 28087.0 7 28826.0 8 29565.0 9 30973.0 10 32381.0 11 31971.0 12 31561.0 13 30551.5 14 29542.0 15 27481.0 16 25420.0 17 24360.5 18 23301.0 19 23680.0 20 24059.0 21 23628.0 22 23197.0 23 23825.0 24 24453.0 25 27830.0 26 37561.5 27 43916.0 28 51754.0 29 59592.0 30 67512.5 31 75433.0 32 88165.5 33 100898.0 34 108927.5 35 116957.0 36 126441.0 37 135925.0 38 158845.5 39 181766.0 40 247285.5 41 312805.0 42 384781.5 43 456758.0 44 454278.5 45 451799.0 46 440210.5 47 428622.0 48 409845.5 49 391069.0 50 371113.5 51 351158.0 52 330440.0 53 309722.0 54 291823.5 55 273925.0 56 264221.5 57 254518.0 58 237425.5 59 220333.0 60 205291.5 61 190250.0 62 160475.0 63 130700.0 64 109650.5 65 88601.0 66 69265.5 67 49930.0 68 38362.5 69 26795.0 70 21995.0 71 17195.0 72 14953.0 73 12711.0 74 9957.0 75 5016.5 76 2830.0 77 2124.0 78 1418.0 79 1056.0 80 694.0 81 506.5 82 319.0 83 210.0 84 101.0 85 82.5 86 64.0 87 48.0 88 32.0 89 19.0 90 6.0 91 5.0 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 5066703.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.110948361998878 #Duplication Level Percentage of deduplicated Percentage of total 1 81.09199769461483 12.253769897346567 2 7.359765686696759 2.224260784961719 3 2.4668381365899084 1.1182879109825892 4 1.3184364039597696 0.7969129767526228 5 0.8522935369213493 0.6439481812841947 6 0.5708153532072555 0.5175336795930592 7 0.4227405699251229 0.44716076458623555 8 0.3421179927163365 0.41357818573178157 9 0.27558379446907516 0.3747899238863316 >10 2.735336673748963 9.564864429559616 >50 0.8921221642404032 9.7179477114519 >100 1.6057852747622674 53.69208034673053 >500 0.058638768178996124 5.4625891099846235 >1k 0.007131742075823853 1.8689459173858958 >5k 2.6413859540088346E-4 0.2876590935642698 >10k+ 1.3206929770044173E-4 0.6156710861979827 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30850 0.6088772126568303 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 8747 0.17263691990629804 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 5667 0.11184788214347674 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.015414363147001117 0.0 2 0.0 0.0 0.0 0.06015746334450628 0.0 3 0.0 0.0 0.0 0.08840068186353138 0.0 4 0.0 0.0 0.0 0.1282688170196674 0.0 5 0.0 0.0 0.0 0.21953132046618876 0.0 6 0.0 0.0 0.0 0.32466872441506833 0.0 7 0.0 0.0 0.0 0.3988984552676563 0.0 8 0.0 0.0 0.0 0.6088377392556856 0.0 9 0.0 0.0 0.0 0.7004357666119368 0.0 10 0.0 0.0 0.0 0.8479281299890679 0.0 11 0.0 0.0 0.0 0.9649272909819265 0.0 12 0.0 0.0 0.0 1.0834264412182835 0.0 13 0.0 0.0 0.0 1.1329655596548682 0.0 14 0.0 0.0 0.0 1.1498207019436506 0.0 15 0.0 0.0 0.0 1.1785178645758396 0.0 16 0.0 0.0 0.0 1.244004237074879 0.0 17 0.0 0.0 0.0 1.3178194972154476 0.0 18 0.0 0.0 0.0 1.4460488408339702 0.0 19 0.0 0.0 0.0 1.4945616508407933 0.0 20 0.0 0.0 0.0 1.5510086144776989 0.0 21 0.0 0.0 0.0 1.618212079926532 0.0 22 0.0 0.0 0.0 1.6841918699398801 0.0 23 0.0 0.0 0.0 1.760651847957143 0.0 24 0.0 0.0 0.0 1.822171143641141 0.0 25 0.0 0.0 0.0 1.8718484189817324 3.947340114468916E-5 26 0.0 0.0 0.0 1.9220191118366323 3.947340114468916E-5 27 0.0 0.0 0.0 1.9742818949522007 3.947340114468916E-5 28 0.0 0.0 0.0 2.0306893851879613 3.947340114468916E-5 29 0.0 0.0 0.0 2.090629744826172 3.947340114468916E-5 30 0.0 0.0 0.0 2.1717870575796527 3.947340114468916E-5 31 0.0 0.0 0.0 2.244674692793321 3.947340114468916E-5 32 0.0 0.0 0.0 2.312805783169055 3.947340114468916E-5 33 0.0 0.0 0.0 2.387272354428511 3.947340114468916E-5 34 0.0 0.0 0.0 2.459962622636456 3.947340114468916E-5 35 1.973670057234458E-5 0.0 0.0 2.5506132883652346 3.947340114468916E-5 36 1.973670057234458E-5 0.0 0.0 2.632303492034169 3.947340114468916E-5 37 1.973670057234458E-5 0.0 0.0 2.7133226478836434 3.947340114468916E-5 38 1.973670057234458E-5 0.0 0.0 2.7943812771342627 3.947340114468916E-5 39 1.973670057234458E-5 0.0 0.0 2.8765648983175054 3.947340114468916E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATA 20 7.035567E-4 45.0 12 CGTTTTT 25000 0.0 43.092 1 AGTACGG 505 0.0 41.435646 2 CGGTCTA 1050 0.0 39.85714 31 TCACGAC 1080 0.0 39.583332 25 ACTCGAC 40 3.4613367E-7 39.375 10 CGCATCG 430 0.0 39.244183 21 TCGTAAG 195 0.0 39.23077 1 AACGTAG 220 0.0 38.863636 1 GCGTAAG 315 0.0 38.57143 1 ACGATAT 70 0.0 38.571426 35 TACGATA 70 0.0 38.571426 34 GCGCGAC 2830 0.0 38.480564 9 CGAGGGA 1690 0.0 38.47633 4 GCGATAT 575 0.0 38.347824 9 CACGTTA 135 0.0 38.333332 25 CGTAAGG 605 0.0 38.305782 2 GACGGTC 1105 0.0 38.076923 29 TAGGGCG 1875 0.0 38.04 5 CGACGGT 1120 0.0 37.566963 28 >>END_MODULE