##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545054_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2927115 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.95294547703114 31.0 31.0 33.0 28.0 34.0 2 31.23274213688222 31.0 31.0 34.0 28.0 34.0 3 31.30656294679232 31.0 31.0 34.0 28.0 34.0 4 35.13356871868717 35.0 35.0 37.0 32.0 37.0 5 34.989287062517185 35.0 35.0 37.0 32.0 37.0 6 35.05249366697243 37.0 35.0 37.0 32.0 37.0 7 35.624848699145744 37.0 35.0 37.0 35.0 37.0 8 35.57739378193204 37.0 35.0 37.0 35.0 37.0 9 37.30734426218307 39.0 37.0 39.0 35.0 39.0 10 36.65060340984211 39.0 35.0 39.0 32.0 39.0 11 36.26254041949155 38.0 35.0 39.0 32.0 39.0 12 35.268402163905414 37.0 35.0 39.0 30.0 39.0 13 34.685250835720495 37.0 33.0 39.0 27.0 39.0 14 35.60559868676154 37.0 33.0 40.0 27.0 41.0 15 36.05291729228267 37.0 34.0 40.0 30.0 41.0 16 36.21465880226776 37.0 34.0 40.0 31.0 41.0 17 36.1328728116251 37.0 34.0 40.0 31.0 41.0 18 36.08886873252332 37.0 35.0 40.0 30.0 41.0 19 35.973475931078895 37.0 34.0 40.0 30.0 41.0 20 35.8269535019977 36.0 34.0 40.0 30.0 41.0 21 35.63572254591979 36.0 34.0 40.0 30.0 41.0 22 35.52361762349617 36.0 34.0 40.0 30.0 41.0 23 35.5209901216727 35.0 34.0 40.0 30.0 41.0 24 35.45896317705317 35.0 34.0 40.0 30.0 41.0 25 35.33308462428022 35.0 34.0 40.0 29.0 41.0 26 35.202771329448964 35.0 34.0 40.0 29.0 41.0 27 35.07117417662101 35.0 34.0 40.0 29.0 41.0 28 35.140785722460514 36.0 34.0 40.0 29.0 41.0 29 35.201114066239285 36.0 34.0 40.0 29.0 41.0 30 35.109182591049546 36.0 34.0 40.0 29.0 41.0 31 34.88896643965133 35.0 34.0 40.0 28.0 41.0 32 34.645437230857006 35.0 34.0 40.0 27.0 41.0 33 34.376660636838665 35.0 33.0 40.0 25.0 41.0 34 34.221893229340154 35.0 33.0 40.0 24.0 41.0 35 34.03501058209192 35.0 33.0 40.0 23.0 41.0 36 33.82878738963109 35.0 33.0 40.0 23.0 41.0 37 33.77630533819136 35.0 33.0 40.0 23.0 41.0 38 33.79483347938157 35.0 33.0 40.0 23.0 41.0 39 33.76041699762394 35.0 33.0 40.0 23.0 41.0 40 33.60834507697853 35.0 33.0 40.0 23.0 41.0 41 33.60869320132622 35.0 33.0 40.0 23.0 41.0 42 33.56073779130646 35.0 33.0 39.0 23.0 41.0 43 33.43303628316619 35.0 32.0 39.0 23.0 41.0 44 33.361371521105255 35.0 32.0 39.0 23.0 41.0 45 33.307300191485474 35.0 32.0 39.0 23.0 41.0 46 33.244405498246564 35.0 32.0 39.0 23.0 41.0 47 33.16196049693982 35.0 32.0 39.0 23.0 41.0 48 33.152976224029466 35.0 32.0 39.0 23.0 41.0 49 33.21694911200961 35.0 32.0 39.0 22.0 41.0 50 33.09862646325819 35.0 32.0 39.0 22.0 41.0 51 32.88955234078606 35.0 32.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 7.0 13 6.0 14 23.0 15 70.0 16 323.0 17 834.0 18 2169.0 19 4124.0 20 7218.0 21 11337.0 22 17198.0 23 24777.0 24 34986.0 25 47902.0 26 60876.0 27 70614.0 28 76048.0 29 84932.0 30 99693.0 31 121277.0 32 150275.0 33 191088.0 34 312999.0 35 426286.0 36 201222.0 37 238066.0 38 316732.0 39 425864.0 40 167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.211243835653878 22.722612538284285 29.719843600268526 16.346300025793315 2 31.24585129043444 24.746789927966613 31.21373775885129 12.793621022747653 3 27.663381862345688 24.85027065899358 33.966823988808095 13.519523489852636 4 24.964376186108165 27.454712233718183 33.09343841974094 14.487473160432712 5 22.1312452705138 31.84794584428695 32.143390334851894 13.877418550347356 6 20.006286052990742 40.46226403813994 29.39235390478338 10.139096004085935 7 85.25691679349804 4.705964746858254 8.496010576967423 1.541107882676287 8 87.05062834907409 3.623055465876811 7.788043858884943 1.5382723261641582 9 83.4348496728007 4.893213966653172 9.450636548273641 2.2212998122724934 10 52.27884794413612 24.428524331978757 13.905500808816873 9.38712691506825 11 45.927235520299 20.216253888214165 22.16322214877106 11.69328844271578 12 41.367728975458775 21.21908432022657 25.047632224904042 12.365554479410616 13 21.35027151307687 41.30838726869289 24.816483124168336 12.5248580940619 14 14.954007615006585 42.606423047949946 29.23766233988074 13.201906997162736 15 13.21393248984068 22.664022424810778 50.504916957482024 13.617128127866518 16 14.741580019917222 18.257396788305208 47.855379785215135 19.145643406562435 17 15.327344501326392 18.57620899759661 30.988635567786027 35.10781093329097 18 21.204838211002986 21.85701620879262 37.18500981341696 19.753135766787434 19 28.15731530875965 23.03862335439503 28.307941437217192 20.49611989962813 20 30.3998305498759 22.311081047379417 27.40883087955205 19.880257523192633 21 21.528399123368914 27.811445740942876 30.388727467147685 20.271427668540525 22 22.345483522171147 24.326580950868003 27.116631905476897 26.21130362148395 23 17.433855519854873 29.869478992113397 27.461203266697755 25.235462221333975 24 19.10324671220639 23.635354265206526 40.76095404519467 16.500444977392416 25 16.46146461618351 24.284218419843427 38.18425309562487 21.070063868348186 26 16.18938784434503 33.600558912102876 29.39221725145749 20.817835992094604 27 16.727152845036837 34.69645025904346 30.152043906713605 18.424352989206096 28 14.325060682617528 28.610047777419062 39.381814517024445 17.68307702293897 29 14.692179842609532 23.881535231789663 39.60773662804502 21.818548297555786 30 17.45192792220326 30.880542787010416 33.541217205337 18.126312085449324 31 28.56225327669053 26.724061063538674 26.509788648549854 18.203897011220946 32 29.67126334291615 26.109804363682326 27.956298266381747 16.26263402701978 33 27.961559419428344 27.327180517335332 26.132147182464642 18.57911288077168 34 19.238670158159145 28.043380598302427 29.179926309694014 23.538022933844417 35 19.2311883885669 25.94284816278144 32.985892252268876 21.840071196382787 36 30.63596749700644 25.166554781756094 26.90246198048249 17.295015740754977 37 19.856514007819985 32.76096087786097 29.481486036592347 17.901039077726704 38 20.26483414556654 33.0128812841313 24.80609747140102 21.916187098901137 39 19.836665112235085 31.648090355179075 28.27931256544413 20.235931967141706 40 23.929022262534954 26.10464570063014 25.926928050315755 24.03940398651915 41 16.835894729110404 24.803671874866552 28.435917276909173 29.92451611911387 42 21.354234459527554 25.686213216768046 25.28978191837355 27.669770405330844 43 21.25246189507416 26.129379952615462 26.974819916538983 25.643338235771402 44 18.991122658317146 29.440387548832213 29.83049863090449 21.737991161946148 45 17.16509259116912 37.8680372995253 24.356508029236977 20.6103620800686 46 21.900847763070463 32.64237995432362 26.13522188229707 19.321550400308837 47 20.949125674939317 28.733616547351232 26.75757529171215 23.559682485997303 48 21.983659678557213 25.33825968573151 31.602311491007356 21.075769144703916 49 21.32973935086254 23.77357910433994 33.092925969768864 21.803755575028656 50 19.847119091665345 32.880088414701845 27.20364591073463 20.069146582898178 51 17.763599995217135 33.06979739436271 25.643953175737888 23.522649434682272 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3991.0 1 4595.0 2 5199.0 3 18631.0 4 32063.0 5 23767.5 6 15472.0 7 16300.0 8 17128.0 9 18382.0 10 19636.0 11 19654.0 12 19672.0 13 18950.5 14 18229.0 15 17221.5 16 16214.0 17 15927.5 18 15641.0 19 15187.5 20 14734.0 21 13932.0 22 13130.0 23 13703.0 24 14276.0 25 15888.0 26 19261.0 27 21022.0 28 27373.0 29 33724.0 30 39506.0 31 45288.0 32 48948.5 33 52609.0 34 61441.5 35 70274.0 36 76214.5 37 82155.0 38 102975.5 39 123796.0 40 169823.0 41 215850.0 42 256740.0 43 297630.0 44 308938.5 45 320247.0 46 300704.0 47 281161.0 48 258124.0 49 235087.0 50 217079.0 51 199071.0 52 184837.5 53 170604.0 54 158058.0 55 145512.0 56 134173.5 57 122835.0 58 109742.5 59 96650.0 60 84721.5 61 72793.0 62 61194.0 63 49595.0 64 40905.0 65 32215.0 66 24894.0 67 17573.0 68 12629.0 69 7685.0 70 6382.5 71 5080.0 72 3918.0 73 2756.0 74 2198.0 75 1240.0 76 840.0 77 537.5 78 235.0 79 201.5 80 168.0 81 113.0 82 58.0 83 53.0 84 48.0 85 33.5 86 19.0 87 12.5 88 6.0 89 4.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2927115.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.722128868959018 #Duplication Level Percentage of deduplicated Percentage of total 1 81.31753371143702 13.598022780285692 2 7.529374833915173 2.518143525508528 3 2.5600254502547126 1.2842722646092242 4 1.2995453945414728 0.869246622343388 5 0.7314408527898536 0.6115624100186606 6 0.5196155743116947 0.5213447157574985 7 0.38193099124179447 0.4470689478216182 8 0.2990004187028325 0.3999938826737175 9 0.22661640820550827 0.34105579036498174 >10 2.593959680271378 10.198545077208205 >50 0.9401225122018828 11.35277914372301 >100 1.575117134916517 53.68585374944369 >500 0.023453937935727108 2.5515691524603556 >1k 0.0018516266791363508 0.4937588716677592 >5k 0.0 0.0 >10k+ 4.1147259536363347E-4 1.1267830661136042 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17739 0.606023336971728 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 15013 0.5128940953806052 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3332 0.11383222046281065 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.032625981555217336 0.0 2 0.0 0.0 0.0 0.11458381375518215 0.0 3 0.0 0.0 0.0 0.16299325445020096 0.0 4 0.0 0.0 0.0 0.23231065400573603 0.0 5 0.0 0.0 0.0 0.37320023299392063 0.0 6 0.0 0.0 0.0 0.5181552484272056 0.0 7 0.0 0.0 0.0 0.6187662596105722 0.0 8 0.0 0.0 0.0 0.8981198210524698 0.0 9 0.0 0.0 0.0 1.0307760371560393 0.0 10 3.416333147143177E-5 0.0 0.0 1.2450484521448593 0.0 11 3.416333147143177E-5 0.0 0.0 1.4159675994964325 0.0 12 3.416333147143177E-5 0.0 0.0 1.5855543769206197 0.0 13 3.416333147143177E-5 0.0 0.0 1.6599962761968696 0.0 14 3.416333147143177E-5 0.0 0.0 1.6868144914019436 0.0 15 3.416333147143177E-5 0.0 0.0 1.7296211457356476 0.0 16 3.416333147143177E-5 0.0 0.0 1.8349466966620718 0.0 17 3.416333147143177E-5 0.0 0.0 1.9568073000206687 0.0 18 3.416333147143177E-5 0.0 0.0 2.1651011320019884 0.0 19 3.416333147143177E-5 0.0 0.0 2.239303887957938 0.0 20 3.416333147143177E-5 0.0 0.0 2.322764906742646 0.0 21 3.416333147143177E-5 0.0 0.0 2.4192421548179692 0.0 22 3.416333147143177E-5 0.0 0.0 2.5133621330217637 0.0 23 3.416333147143177E-5 0.0 0.0 2.629073336715503 0.0 24 3.416333147143177E-5 0.0 0.0 2.7113044755672395 0.0 25 3.416333147143177E-5 0.0 0.0 2.780109425150703 0.0 26 3.416333147143177E-5 0.0 0.0 2.8499392746783094 0.0 27 3.416333147143177E-5 0.0 0.0 2.922536354055102 0.0 28 3.416333147143177E-5 0.0 0.0 3.003332632985038 0.0 29 3.416333147143177E-5 0.0 0.0 3.0874427550677033 0.0 30 3.416333147143177E-5 0.0 0.0 3.19355406261797 0.0 31 3.416333147143177E-5 0.0 0.0 3.2970689569764087 0.0 32 3.416333147143177E-5 0.0 0.0 3.386508558768617 0.0 33 3.416333147143177E-5 0.0 0.0 3.481482620259197 0.0 34 3.416333147143177E-5 0.0 0.0 3.579428891587792 0.0 35 3.416333147143177E-5 0.0 0.0 3.7083613045609756 0.0 36 3.416333147143177E-5 0.0 0.0 3.8120128522452994 0.0 37 3.416333147143177E-5 0.0 0.0 3.921813799594481 0.0 38 3.416333147143177E-5 0.0 0.0 4.030658173662463 0.0 39 3.416333147143177E-5 0.0 0.0 4.146608520676502 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCGGT 35 1.212793E-7 45.000004 31 GCCGAAT 20 7.035078E-4 45.0 41 TATCTCG 55 1.8189894E-12 45.0 1 ATCGGTT 25 3.8922895E-5 45.0 27 GTACGTA 40 6.8212103E-9 45.0 11 CGTTTTT 15590 0.0 43.5712 1 CGACGGT 730 0.0 43.150684 28 CGTAATA 115 0.0 43.04348 44 GCGTAAG 115 0.0 43.04348 1 CGGTCTA 750 0.0 42.3 31 GCTACGA 330 0.0 42.272728 10 ACTACGG 155 0.0 42.09677 2 TACTCGC 200 0.0 41.625 45 TGCGTAT 60 3.6379788E-12 41.250004 37 ACTCACG 55 6.184564E-11 40.909092 1 TCACGAC 795 0.0 40.75472 25 CGTAAGG 465 0.0 40.645157 2 TAATGCG 185 0.0 40.135136 1 CTAGACG 90 0.0 40.0 1 ATTAACG 180 0.0 40.0 1 >>END_MODULE