SRR1545052_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545052_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3333188
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20378	0.6113666555861836	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8066	0.24199055078801437	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGGT	25	3.8924063E-5	45.000004	19
GTCGATC	20	7.035218E-4	45.0	26
CACTCGA	20	7.035218E-4	45.0	41
CGTTTTT	18920	0.0	42.562103	1
ATTAACG	160	0.0	40.78125	1
GCCGACC	290	0.0	40.344826	14
GCGCGAC	1370	0.0	39.41606	9
ATCGTAC	40	3.4608638E-7	39.375	24
CCCGTAA	40	3.4608638E-7	39.375	33
CGTAGGT	40	3.4608638E-7	39.375	33
CACGACG	445	0.0	38.932583	26
ATCCCGT	35	6.251863E-6	38.571426	28
CGCATCG	195	0.0	38.076923	21
TAGGGCG	1155	0.0	37.792206	5
ACCCGCT	1430	0.0	37.762238	34
CGCGACC	1480	0.0	37.550674	10
ACGTTAG	150	0.0	37.5	1
CGCGATA	30	1.1403875E-4	37.499996	31
TCGTAGA	30	1.1403875E-4	37.499996	16
GGCGCGA	1435	0.0	37.473866	8