SRR1545044_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545044_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2928174
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14642	0.5000385906028809	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6772	0.23127040947703245	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3007	0.10269198483423458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	20	7.0350786E-4	45.0	44
GCGCCTA	40	6.8212103E-9	45.0	42
CGTTACA	20	7.0350786E-4	45.0	24
GTTCGAC	25	3.8922906E-5	45.0	17
TACGACT	20	7.0350786E-4	45.0	45
CGCTAAT	20	7.0350786E-4	45.0	21
CGACTAT	25	3.8922906E-5	45.0	33
CGATCGC	50	2.1827873E-11	45.0	34
CGTTTTT	14640	0.0	43.017418	1
CGATGAA	3100	0.0	42.241936	19
GCAACTA	125	0.0	41.399998	9
CGACGGT	465	0.0	41.129032	28
CGGTCTA	460	0.0	41.08696	31
TCACGAC	515	0.0	41.06796	25
CCGATGA	3105	0.0	40.72464	18
TATGTCG	100	0.0	40.5	1
GTTGATC	1995	0.0	40.263157	16
CACGGGC	280	0.0	40.17857	4
CGCATCG	230	0.0	40.1087	21
TAACGGG	550	0.0	40.090908	3