##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545044_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2928174 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.874339093236944 31.0 31.0 33.0 28.0 34.0 2 31.14975885995846 31.0 31.0 34.0 28.0 34.0 3 31.23208764233273 31.0 31.0 34.0 28.0 34.0 4 35.064126312165875 35.0 35.0 37.0 32.0 37.0 5 34.920372901337146 35.0 35.0 37.0 32.0 37.0 6 34.987214557604844 36.0 35.0 37.0 32.0 37.0 7 35.52763121317244 37.0 35.0 37.0 35.0 37.0 8 35.44019754290558 37.0 35.0 37.0 35.0 37.0 9 37.120606220805186 39.0 37.0 39.0 34.0 39.0 10 36.52151921299759 39.0 35.0 39.0 32.0 39.0 11 36.199290069510894 38.0 35.0 39.0 31.0 39.0 12 35.24914195672798 37.0 35.0 39.0 30.0 39.0 13 34.6499121978407 37.0 33.0 39.0 27.0 39.0 14 35.62731176494293 37.0 33.0 40.0 27.0 41.0 15 36.071803451570844 38.0 34.0 40.0 30.0 41.0 16 36.214265272487225 38.0 34.0 40.0 31.0 41.0 17 36.082955111274124 37.0 34.0 40.0 31.0 41.0 18 36.04451169909985 37.0 34.0 40.0 30.0 41.0 19 35.947961425789586 37.0 34.0 40.0 30.0 41.0 20 35.697836262462545 36.0 34.0 40.0 30.0 41.0 21 35.54825635361833 36.0 34.0 40.0 29.0 41.0 22 35.42901958695077 36.0 34.0 40.0 29.0 41.0 23 35.35064138948027 36.0 34.0 40.0 29.0 41.0 24 35.29738294240711 35.0 34.0 40.0 29.0 41.0 25 35.23692922620035 35.0 34.0 40.0 29.0 41.0 26 35.04759211713512 35.0 34.0 40.0 29.0 41.0 27 34.92176216304086 35.0 34.0 40.0 27.0 41.0 28 34.98056672861654 36.0 34.0 40.0 27.0 41.0 29 35.02369941130548 36.0 34.0 40.0 28.0 41.0 30 34.93931917980284 36.0 34.0 40.0 27.0 41.0 31 34.74971091198815 36.0 33.0 40.0 27.0 41.0 32 34.45913016098087 35.0 33.0 40.0 25.0 41.0 33 34.1597965148246 35.0 33.0 40.0 24.0 41.0 34 33.992568406112476 35.0 33.0 40.0 23.0 41.0 35 33.764268790037754 35.0 33.0 40.0 23.0 41.0 36 33.552092191242735 35.0 33.0 40.0 21.0 41.0 37 33.516257230615395 35.0 32.0 40.0 22.0 41.0 38 33.49284639505712 35.0 32.0 40.0 23.0 41.0 39 33.46179564465773 35.0 32.0 40.0 22.0 41.0 40 33.298891391017065 35.0 32.0 40.0 21.0 41.0 41 33.28674354734384 35.0 32.0 39.0 21.0 41.0 42 33.251219019088346 35.0 32.0 39.0 21.0 41.0 43 33.15007202440839 35.0 32.0 39.0 21.0 41.0 44 33.10402967856418 35.0 32.0 39.0 21.0 41.0 45 33.05915597911873 35.0 32.0 39.0 21.0 41.0 46 32.99932995785087 35.0 32.0 39.0 21.0 41.0 47 32.87529292999665 35.0 31.0 39.0 20.0 41.0 48 32.927511138340826 35.0 32.0 39.0 20.0 41.0 49 32.984410079455664 35.0 32.0 39.0 20.0 41.0 50 32.8335368731503 35.0 32.0 39.0 20.0 40.0 51 32.66867303650671 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 7.0 13 16.0 14 45.0 15 144.0 16 401.0 17 1083.0 18 2642.0 19 4825.0 20 8699.0 21 13707.0 22 21363.0 23 30492.0 24 41591.0 25 54113.0 26 66826.0 27 74815.0 28 79585.0 29 87160.0 30 100964.0 31 121798.0 32 149193.0 33 188098.0 34 302871.0 35 397960.0 36 202315.0 37 240376.0 38 315836.0 39 421080.0 40 163.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.86103421449682 22.996686672308407 27.506698713942544 15.63558039925223 2 32.51333424857949 26.573898955458247 28.521938928492634 12.390827867469625 3 29.56941766438743 25.14997401110726 32.22455359551721 13.056054728988101 4 26.57038140493017 27.012636544139795 31.860470040373283 14.55651201055675 5 23.575750621377008 31.24162020426382 31.269589853608426 13.913039320750748 6 20.246201216184556 41.225384830273065 28.55930009623745 9.969113857304928 7 83.61651322633149 4.629267249828732 9.716328332947427 2.0378911908923447 8 84.40663020708469 5.473718433399108 8.277855072820126 1.8417962866960773 9 79.90273119015468 5.606975541754008 10.196730112349881 4.2935631557414276 10 50.96073525685291 23.29642978866693 15.352844468942079 10.389990485538087 11 46.875356450812006 19.9861415339389 20.84046234957349 12.298039665675606 12 41.26861996589001 20.52347299033459 24.26655656392004 13.941350479855362 13 22.222210838563555 38.78768816334002 24.610422741271524 14.379678256824901 14 14.265648147958421 42.93163589322219 28.0884264391392 14.714289519680182 15 14.217768479605377 21.76646606383364 48.833026999078605 15.182738457482376 16 16.12305143068684 16.91460275243206 47.04676019935974 19.915585617521366 17 15.897450083225928 18.871556130202645 30.41315167746179 34.817842109109634 18 21.132077533643834 21.768344367513677 35.53115354483716 21.56842455400533 19 30.077037771662475 22.678570330861486 26.434494671423213 20.809897226052822 20 32.114621603770814 21.50907015771604 26.02673201797434 20.349576220538808 21 21.801197606426395 28.45674471530722 29.501115712385946 20.240941965880445 22 21.739384339865047 23.9016875363281 27.478353403861927 26.88057471994492 23 19.978218507506725 29.11531213650555 26.205170867578225 24.701298488409503 24 19.059557253086737 23.199577620728824 40.15010719991366 17.590757926270776 25 17.619888708799408 25.100762454690194 36.145051489426514 21.134297347083884 26 15.738340686038466 33.088436684432004 29.624195829892624 21.549026799636906 27 18.734200904727658 32.623880957893896 29.98308843668443 18.658829700694017 28 15.015501128006736 29.28593041260526 38.835499529741064 16.86306892964694 29 16.476309126438522 24.022274632586722 38.81053516628452 20.690881074690235 30 18.428310612689 31.019980370018995 31.964698819127552 18.587010198164453 31 29.303688920125648 25.78866556427316 25.674089039790672 19.233556475810524 32 30.677582684635546 25.55486798257207 27.04255279911645 16.724996533675938 33 28.419656755370408 27.2152884357282 25.18695951811607 19.178095290785315 34 19.58695077546621 27.853604328158095 27.83290883670164 24.72653605967405 35 20.83578366586139 25.781562161265008 31.069226077412065 22.31342809546154 36 29.476287952833403 26.685880005764684 25.586491786348763 18.25134025505315 37 20.087160120949097 33.733514470110045 27.89386832886297 18.28545708007789 38 20.347356407098758 33.55637335759419 24.2050165051667 21.891253730140352 39 20.94711584762381 31.606250175023753 26.372032536317857 21.07460144103458 40 24.32266661748926 25.780025367344972 26.285528114107976 23.61177990105779 41 16.76792431050887 25.410545957992937 27.78219463734054 30.039335094157654 42 21.767422291161658 26.36865158969378 24.249788434703675 27.61413768444088 43 22.510786585769836 25.925269468276134 25.95815685816485 25.605787087789185 44 19.97753548798671 29.866565306569896 28.792380507442523 21.36351869800087 45 17.431614378107312 37.45764425201508 23.43931747225404 21.67142389762357 46 21.486940325267557 33.75390260278249 25.491996035754706 19.267161036195255 47 21.742389625753113 28.009469382625486 26.856395828936396 23.391745162685005 48 22.15353322582606 25.441179383465602 31.509944422701658 20.895342968006684 49 20.995780988424865 25.326022292391094 32.40514395660913 21.273052762574903 50 19.453727818087312 32.532390493187904 27.175331793807334 20.838549894917445 51 18.398974924304362 33.488788576088716 25.018765961312404 23.093470538294515 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2300.0 1 3642.0 2 4984.0 3 17130.0 4 29276.0 5 22475.5 6 15675.0 7 16493.0 8 17311.0 9 17976.5 10 18642.0 11 18706.5 12 18771.0 13 18149.0 14 17527.0 15 16438.0 16 15349.0 17 14476.0 18 13603.0 19 13041.5 20 12480.0 21 12589.0 22 12698.0 23 13249.5 24 13801.0 25 15744.0 26 19559.5 27 21432.0 28 28096.5 29 34761.0 30 39721.5 31 44682.0 32 54132.5 33 63583.0 34 65152.5 35 66722.0 36 70987.0 37 75252.0 38 93814.0 39 112376.0 40 157472.0 41 202568.0 42 242839.0 43 283110.0 44 280576.5 45 278043.0 46 270490.5 47 262938.0 48 238775.5 49 214613.0 50 210654.0 51 206695.0 52 191539.0 53 176383.0 54 166576.0 55 156769.0 56 146496.5 57 136224.0 58 127469.5 59 118715.0 60 109195.0 61 99675.0 62 82781.0 63 65887.0 64 54641.0 65 43395.0 66 32797.5 67 22200.0 68 17389.0 69 12578.0 70 10080.0 71 7582.0 72 6661.5 73 5741.0 74 4245.0 75 2248.0 76 1747.0 77 1339.5 78 932.0 79 667.5 80 403.0 81 286.5 82 170.0 83 135.5 84 101.0 85 65.5 86 30.0 87 18.5 88 7.0 89 6.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2928174.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.480095681327672 #Duplication Level Percentage of deduplicated Percentage of total 1 82.12997054754663 13.535097729281922 2 6.552487502204441 2.159712419740659 3 2.315457991008486 1.144769077137438 4 1.2328631844824827 0.8127081296903059 5 0.751523923381459 0.6192593082066605 6 0.5451882144696418 0.5390852363275135 7 0.3961294390669453 0.45697757406097433 8 0.29514532671163546 0.38912185792835746 9 0.2356411923767085 0.34950504571472674 >10 2.88365726894825 11.29016267573388 >50 0.9964409853199725 11.859079695056158 >100 1.6378999397725729 52.64105976239629 >500 0.02299540392567037 2.4649011903338227 >1k 0.004180982531940068 1.0008159612450214 >5k 2.0904912659700336E-4 0.233305531481972 >10k+ 2.0904912659700336E-4 0.5044388056643582 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14642 0.5000385906028809 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6772 0.23127040947703245 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3007 0.10269198483423458 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016016807744348525 0.0 2 0.0 0.0 0.0 0.06259873900936215 0.0 3 0.0 0.0 0.0 0.08776800832190983 0.0 4 0.0 0.0 0.0 0.13615994131496284 0.0 5 0.0 0.0 0.0 0.25493703584554744 0.0 6 0.0 0.0 0.0 0.34697391616755013 0.0 7 0.0 0.0 0.0 0.4266822941532846 0.0 8 0.0 0.0 0.0 0.6222990846855412 0.0 9 0.0 0.0 0.0 0.6922744345110639 0.0 10 0.0 0.0 0.0 0.8630634654907803 0.0 11 3.4150976000743126E-5 0.0 0.0 0.9482018486606328 0.0 12 3.4150976000743126E-5 0.0 0.0 1.0845325448555994 0.0 13 6.830195200148625E-5 0.0 0.0 1.128723907800561 0.0 14 6.830195200148625E-5 0.0 0.0 1.1450822253049169 0.0 15 6.830195200148625E-5 0.0 0.0 1.1799503718016757 0.0 16 6.830195200148625E-5 0.0 0.0 1.239475522970971 0.0 17 6.830195200148625E-5 0.0 0.0 1.3020742619803332 0.0 18 6.830195200148625E-5 0.0 0.0 1.4158994649908099 0.0 19 6.830195200148625E-5 0.0 0.0 1.4666136643519134 0.0 20 6.830195200148625E-5 0.0 0.0 1.5115904997448921 0.0 21 6.830195200148625E-5 0.0 0.0 1.5602556405459511 0.0 22 6.830195200148625E-5 0.0 0.0 1.6142824845791268 0.0 23 6.830195200148625E-5 0.0 0.0 1.678076507748515 0.0 24 6.830195200148625E-5 0.0 0.0 1.7276978758775947 0.0 25 6.830195200148625E-5 0.0 0.0 1.767278857062456 0.0 26 6.830195200148625E-5 0.0 0.0 1.8116068239114205 0.0 27 6.830195200148625E-5 0.0 0.0 1.8544321478163523 0.0 28 6.830195200148625E-5 0.0 0.0 1.9013897398173742 0.0 29 6.830195200148625E-5 0.0 0.0 1.9506695981864466 0.0 30 6.830195200148625E-5 0.0 0.0 2.0156930564918616 0.0 31 1.0245292800222937E-4 0.0 0.0 2.07627688791718 0.0 32 1.0245292800222937E-4 0.0 0.0 2.129689014382342 0.0 33 1.0245292800222937E-4 0.0 0.0 2.1895898262876456 0.0 34 1.0245292800222937E-4 0.0 0.0 2.25092497918498 0.0 35 1.0245292800222937E-4 0.0 0.0 2.3293014691066856 0.0 36 1.0245292800222937E-4 0.0 0.0 2.3911147356680305 0.0 37 1.0245292800222937E-4 0.0 0.0 2.458494611317497 0.0 38 1.366039040029725E-4 0.0 0.0 2.5225959932708917 0.0 39 1.366039040029725E-4 0.0 0.0 2.587960961336314 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 20 7.0350786E-4 45.0 44 GCGCCTA 40 6.8212103E-9 45.0 42 CGTTACA 20 7.0350786E-4 45.0 24 GTTCGAC 25 3.8922906E-5 45.0 17 TACGACT 20 7.0350786E-4 45.0 45 CGCTAAT 20 7.0350786E-4 45.0 21 CGACTAT 25 3.8922906E-5 45.0 33 CGATCGC 50 2.1827873E-11 45.0 34 CGTTTTT 14640 0.0 43.017418 1 CGATGAA 3100 0.0 42.241936 19 GCAACTA 125 0.0 41.399998 9 CGACGGT 465 0.0 41.129032 28 CGGTCTA 460 0.0 41.08696 31 TCACGAC 515 0.0 41.06796 25 CCGATGA 3105 0.0 40.72464 18 TATGTCG 100 0.0 40.5 1 GTTGATC 1995 0.0 40.263157 16 CACGGGC 280 0.0 40.17857 4 CGCATCG 230 0.0 40.1087 21 TAACGGG 550 0.0 40.090908 3 >>END_MODULE