SRR1545043_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545043_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2234915
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	11550	0.5167981780067699	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9562	0.42784624918621067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	45	3.8562575E-10	45.000004	6
AACGTTC	40	6.8193913E-9	45.0	40
ACTATCG	40	6.8193913E-9	45.0	29
GACAACG	35	1.2126111E-7	45.0	1
ACTCTCG	25	3.8919927E-5	45.0	19
CGACACG	20	7.034719E-4	45.0	34
TATGCGT	35	1.2126111E-7	45.0	15
TACGCAA	20	7.034719E-4	45.0	30
CGTACTC	25	3.8919927E-5	45.0	12
GCGTGTT	35	1.2126111E-7	45.0	3
CAGTCGT	20	7.034719E-4	45.0	38
ATCGGGT	35	1.2126111E-7	45.0	24
TGTCGAC	25	3.8919927E-5	45.0	38
CAATACG	40	6.8193913E-9	45.0	1
CGATACA	25	3.8919927E-5	45.0	10
TCGAAAC	20	7.034719E-4	45.0	34
CGGTTGC	30	2.1664255E-6	44.999996	24
TAGCACG	30	2.1664255E-6	44.999996	1
TACTACG	30	2.1664255E-6	44.999996	12
ACGGGAT	505	0.0	43.21782	5