SRR1545042_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545042_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1709368
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9806	0.5736623126208049	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8483	0.4962652863514469	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5154	0.30151494587473265	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	30	2.1661253E-6	45.000004	31
TCTGCGA	20	7.0342526E-4	45.0	45
CTATGCG	50	2.1827873E-11	45.0	1
GTACCTC	20	7.0342526E-4	45.0	41
GATCGAC	20	7.0342526E-4	45.0	10
AACCCGC	20	7.0342526E-4	45.0	17
AAGCGTC	20	7.0342526E-4	45.0	36
TAACGCG	50	2.1827873E-11	45.0	1
GTAATCG	25	3.891607E-5	45.0	13
CTACGGC	20	7.0342526E-4	45.0	36
ACGTCCA	40	6.8175723E-9	45.0	10
GGTTCGC	20	7.0342526E-4	45.0	8
TCGACGC	20	7.0342526E-4	45.0	42
TATCGTG	50	2.1827873E-11	45.0	1
ATCGATC	20	7.0342526E-4	45.0	19
CGTTTTT	9115	0.0	42.85244	1
TGCGAAG	75	0.0	42.0	1
ACGGGTA	235	0.0	41.17021	5
CGTAAGG	225	0.0	41.0	2
TCGATTG	55	6.184564E-11	40.909092	1