##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545041_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 134496 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.900658755650724 31.0 31.0 33.0 28.0 34.0 2 31.171402866999763 31.0 31.0 34.0 28.0 34.0 3 31.26222341184868 31.0 31.0 34.0 28.0 34.0 4 35.09031495360457 35.0 35.0 37.0 32.0 37.0 5 34.927811979538426 35.0 35.0 37.0 32.0 37.0 6 35.01089251724958 36.0 35.0 37.0 32.0 37.0 7 35.531465619795384 37.0 35.0 37.0 35.0 37.0 8 35.45758981679752 37.0 35.0 37.0 35.0 37.0 9 37.14997472043778 39.0 37.0 39.0 34.0 39.0 10 36.559235962407804 39.0 35.0 39.0 32.0 39.0 11 36.25273614085177 38.0 35.0 39.0 32.0 39.0 12 35.310001784439685 37.0 35.0 39.0 30.0 39.0 13 34.749672852724245 37.0 33.0 39.0 27.0 39.0 14 35.69663781822508 38.0 34.0 40.0 27.0 41.0 15 36.12027123483226 38.0 34.0 40.0 30.0 41.0 16 36.248341958125145 38.0 34.0 40.0 31.0 41.0 17 36.15180377111587 37.0 34.0 40.0 31.0 41.0 18 36.10331162265049 37.0 35.0 40.0 30.0 41.0 19 36.02827593385677 37.0 34.0 40.0 30.0 41.0 20 35.79709433737806 36.0 34.0 40.0 30.0 41.0 21 35.652101177730195 36.0 34.0 40.0 30.0 41.0 22 35.519309124434926 36.0 34.0 40.0 29.0 41.0 23 35.424979181537 36.0 34.0 40.0 29.0 41.0 24 35.37381037354271 36.0 34.0 40.0 29.0 41.0 25 35.26846151558411 35.0 34.0 40.0 29.0 41.0 26 35.06710236735665 35.0 34.0 40.0 29.0 41.0 27 34.94650398524863 35.0 34.0 40.0 27.0 41.0 28 34.99980668570069 36.0 34.0 40.0 27.0 41.0 29 35.05073013323816 36.0 34.0 40.0 28.0 41.0 30 34.993903164406376 36.0 34.0 40.0 28.0 41.0 31 34.83239650249821 36.0 34.0 40.0 27.0 41.0 32 34.543071912919345 35.0 33.0 40.0 26.0 41.0 33 34.288491851058765 35.0 33.0 40.0 24.0 41.0 34 34.09501397811087 35.0 33.0 40.0 23.0 41.0 35 33.93695723292886 35.0 33.0 40.0 23.0 41.0 36 33.748037116345465 35.0 33.0 40.0 23.0 41.0 37 33.670555258148944 35.0 33.0 40.0 23.0 41.0 38 33.64528313109683 35.0 33.0 40.0 23.0 41.0 39 33.59335593623602 35.0 33.0 40.0 23.0 41.0 40 33.4773524863193 35.0 32.0 40.0 23.0 41.0 41 33.46739679990483 35.0 32.0 39.0 22.0 41.0 42 33.404175588865094 35.0 32.0 39.0 22.0 41.0 43 33.248788068046636 35.0 32.0 39.0 22.0 41.0 44 33.20861586961694 35.0 32.0 39.0 22.0 41.0 45 33.1827637996669 35.0 32.0 39.0 23.0 41.0 46 33.10333392814656 35.0 32.0 39.0 22.0 41.0 47 32.96576106352605 35.0 32.0 39.0 22.0 41.0 48 33.00620092790864 35.0 32.0 39.0 22.0 40.0 49 33.05450719724006 35.0 32.0 39.0 22.0 40.0 50 32.91072596954556 35.0 32.0 39.0 21.0 40.0 51 32.742036937901496 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 3.0 15 6.0 16 20.0 17 44.0 18 86.0 19 221.0 20 353.0 21 622.0 22 920.0 23 1275.0 24 1758.0 25 2328.0 26 2811.0 27 3304.0 28 3594.0 29 4112.0 30 4646.0 31 5588.0 32 6779.0 33 8651.0 34 13959.0 35 18866.0 36 9424.0 37 11251.0 38 14957.0 39 18913.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.25603735427076 22.907000951701164 27.600077325719724 15.23688436830835 2 31.95262312633833 25.818611705924337 29.237300737568404 12.991464430168929 3 29.12279919105401 25.799280275993336 31.728081132524387 13.349839400428266 4 26.44390911253866 26.946526290744703 32.02325719724007 14.586307399476564 5 23.944206519152985 31.30055912443493 30.172644539614563 14.582589816797526 6 20.20506186057578 41.720943373780635 27.702682607661195 10.371312157982393 7 84.81144420651916 4.54660361646443 8.760111824886986 1.8818403521294313 8 86.11334166071853 4.597162740899358 7.5370271234832265 1.7524684748988817 9 82.12586247918154 5.098292886033786 8.797287651677372 3.978556983107304 10 50.45577563645015 22.989531287175826 14.240572210325958 12.31412086604806 11 45.80582322150845 19.205032119914346 21.240036878420177 13.74910778015703 12 39.21454913157268 20.358969783487986 25.269896502498217 15.156584582441113 13 21.269034023316678 38.74836426362122 25.69890554365929 14.283696169402807 14 14.368457054484892 42.24884011420414 30.07598738995955 13.306715441351416 15 13.969188674756127 20.66827266238401 49.37916369260053 15.983374970259339 16 15.572953842493456 16.69194622888413 46.69655603140614 21.038543897216275 17 16.3536462050916 17.516506067094934 30.324321912919345 35.805525814894125 18 21.582798001427552 21.104716868903164 35.38692600523435 21.925559124434926 19 29.63359505115394 22.01180704258863 26.651350226029024 21.703247680228408 20 32.525874375446115 21.496550083273853 24.710028551034974 21.267546990245062 21 23.03116821318106 26.582203188198903 29.17187128241732 21.21475731620271 22 23.111467999048298 22.775398524863196 26.543540328336903 27.569593147751608 23 20.034053057339996 28.72130026171782 25.50038662859862 25.744260052343567 24 19.947805139186293 22.89213062098501 39.151350226029024 18.00871401379967 25 18.378985248631928 24.431209850107066 36.672466095645966 20.517338805615037 26 17.445871996193198 31.635885082084226 29.757018796098023 21.161224125624553 27 19.438496312157984 31.675291458482036 28.678176302640974 20.20803592671901 28 16.01906376397811 27.91681536997383 38.650963597430405 17.413157268617656 29 16.637669521770164 23.33526647632643 38.70449678800856 21.322567213894835 30 18.54553295265287 29.400130858910302 32.78759219605044 19.266743992386388 31 29.82021770164168 25.609683559362363 25.005204615750653 19.564894123245303 32 31.57194266000476 24.94051867713538 26.326433499881034 17.161105162978824 33 29.302730192719483 25.4119081608375 24.63939448013324 20.645967166309777 34 20.83779443254818 27.13835355698311 27.55249226742803 24.471359743040686 35 21.0891030216512 25.330121341898643 31.496847489888175 22.08392814656198 36 30.62767665952891 24.384368308351178 26.16657744468237 18.821377587437542 37 21.276469188674756 31.464132762312637 28.231322864620513 19.0280751843921 38 21.494319533666427 32.142219842969304 24.127855103497502 22.23560551986676 39 21.161967642160363 31.214311206281227 26.010438972162742 21.61328217939567 40 24.24830478229836 25.17175231977159 25.614888175113016 24.965054722817033 41 18.134368308351178 24.09216630977873 27.318284558648585 30.455180823221507 42 22.764989293361886 25.209671663097787 24.61857601713062 27.40676302640971 43 22.65717939566976 25.730876754699022 25.630502022364976 25.981441827266238 44 20.15524625267666 28.318314299310014 29.825422317392338 21.701017130620983 45 18.583452295979065 35.35941589340947 24.163543897216275 21.893587913395194 46 22.414049488460623 31.28643231025458 26.86250892219843 19.437009279086368 47 22.564983345229596 28.032060433024032 26.57848560551987 22.824470616226506 48 23.63490364025696 24.700362836069477 30.757048536759456 20.90768498691411 49 21.551570306923626 23.96948608137045 32.89317154413514 21.585772067570783 50 20.252646918867477 32.4478051391863 26.96214013799667 20.33740780394956 51 19.146294313585535 33.48575422317393 24.962080656673805 22.40587080656674 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 97.0 1 159.5 2 222.0 3 686.5 4 1151.0 5 871.0 6 591.0 7 624.5 8 658.0 9 702.5 10 747.0 11 733.5 12 720.0 13 708.5 14 697.0 15 667.0 16 637.0 17 592.5 18 548.0 19 534.0 20 520.0 21 484.0 22 448.0 23 466.5 24 485.0 25 547.5 26 700.5 27 791.0 28 948.0 29 1105.0 30 1389.5 31 1674.0 32 1869.5 33 2065.0 34 2530.0 35 2995.0 36 3280.5 37 3566.0 38 4190.0 39 4814.0 40 6799.5 41 8785.0 42 10709.0 43 12633.0 44 13014.5 45 13396.0 46 13024.0 47 12652.0 48 11556.0 49 10460.0 50 9987.5 51 9515.0 52 9152.5 53 8790.0 54 8281.0 55 7772.0 56 7212.5 57 6653.0 58 6313.5 59 5974.0 60 5257.5 61 4541.0 62 3854.5 63 3168.0 64 2607.5 65 2047.0 66 1653.5 67 1260.0 68 982.0 69 704.0 70 560.0 71 416.0 72 342.5 73 269.0 74 219.5 75 122.5 76 75.0 77 58.0 78 41.0 79 28.0 80 15.0 81 13.5 82 12.0 83 7.0 84 2.0 85 1.5 86 1.0 87 1.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 134496.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.74086961694028 #Duplication Level Percentage of deduplicated Percentage of total 1 67.30345036932106 24.72787294789436 2 8.246483861175756 6.059659766833214 3 4.711120105231205 5.192719486081371 4 3.417990488718001 5.023197715917202 5 2.663158959830011 4.8923388056150365 6 2.2402104624101993 4.938436830835117 7 1.9589193564707075 5.038068046633358 8 1.5258524739451584 4.484891743992386 9 1.4752605484164727 4.878211991434689 >10 6.4292218961853695 33.48575422317393 >50 0.024284124253769097 0.5925826790387818 >100 0.0020236770211474247 0.259487270996907 >500 0.0020236770211474247 0.42677849155365216 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 574 0.42677849155365216 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 349 0.259487270996907 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01412681418034737 0.0 2 0.0 0.0 0.0 0.05130264097073519 0.0 3 0.0 0.0 0.0 0.07063407090173686 0.0 4 0.0 0.0 0.0 0.09814418272662384 0.0 5 0.0 0.0 0.0 0.19331429931001665 0.0 6 0.0 0.0 0.0 0.27510111824886985 0.0 7 0.0 0.0 0.0 0.3442481560789912 0.0 8 0.0 0.0 0.0 0.5115393766357363 0.0 9 0.0 0.0 0.0 0.5866345467523197 0.0 10 0.0 0.0 0.0 0.7725136807042589 0.0 11 0.0 0.0 0.0 0.8654532476802284 0.0 12 0.0 0.0 0.0 1.0111824886985488 0.0 13 0.0 0.0 0.0 1.04389721627409 0.0 14 0.0 0.0 0.0 1.0624851296692839 0.0 15 0.0 0.0 0.0 1.0974304068522485 0.0 16 0.0 0.0 0.0 1.156911729716869 0.0 17 0.0 0.0 0.0 1.2253152510111824 0.0 18 0.0 0.0 0.0 1.3584047109207709 0.0 19 0.0 0.0 0.0 1.409707351891506 0.0 20 0.0 0.0 0.0 1.4550618605757792 0.0 21 0.0 0.0 0.0 1.4974423031168214 0.0 22 0.0 0.0 0.0 1.5420532952652868 0.0 23 0.0 0.0 0.0 1.6037651677373306 0.0 24 0.0 0.0 0.0 1.6543242921722578 0.0 25 0.0 0.0 0.0 1.681834403997145 0.0 26 0.0 0.0 0.0 1.7160361646443016 0.0 27 0.0 0.0 0.0 1.7502379252914584 0.0 28 0.0 0.0 0.0 1.7836961694028075 0.0 29 0.0 0.0 0.0 1.8223590292648109 0.0 30 0.0 0.0 0.0 1.870687604092315 0.0 31 0.0 0.0 0.0 1.9346300261717821 0.0 32 0.0 0.0 0.0 1.974779919105401 0.0 33 0.0 0.0 0.0 2.0245955270045206 0.0 34 0.0 0.0 0.0 2.0855638829407566 0.0 35 0.0 0.0 0.0 2.169581251487033 0.0 36 0.0 0.0 0.0 2.2350107066381155 0.0 37 0.0 0.0 0.0 2.295235546038544 0.0 38 0.0 0.0 0.0 2.3487687366167025 0.0 39 0.0 0.0 0.0 2.401558410659053 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGCAAG 60 0.0 45.000004 1 CGGGTGG 20 7.011057E-4 45.000004 6 CGGGTAC 20 7.011057E-4 45.000004 6 GTACAAG 20 7.011057E-4 45.000004 1 CCGATGG 20 7.011057E-4 45.000004 11 GGATGAC 30 2.151177E-6 45.000004 8 ACCGCTC 20 7.011057E-4 45.000004 18 CTATAGC 20 7.011057E-4 45.000004 39 GACCGCT 20 7.011057E-4 45.000004 17 CCGGAAA 20 7.011057E-4 45.000004 21 CGATTAC 20 7.011057E-4 45.000004 13 TACGGCT 20 7.011057E-4 45.000004 7 CCGCTCG 20 7.011057E-4 45.000004 19 ACGGGCT 30 2.151177E-6 45.000004 5 AATGCGG 30 2.151177E-6 45.000004 2 CGCTCGG 20 7.011057E-4 45.000004 20 CCCCGAT 20 7.011057E-4 45.000004 40 AGCATGC 20 7.011057E-4 45.000004 44 TATTAGG 20 7.011057E-4 45.000004 2 CGGGATA 20 7.011057E-4 45.000004 6 >>END_MODULE