SRR1545038_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545038_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2205335
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19804	0.8980041580984295	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3702	0.16786565306404697	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3686	0.16714013970666589	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3080	0.13966132129585754	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3058	0.13866374042945856	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2350	0.10655977436534586	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2264	0.10266014006942256	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	645	43.604652	31
CGTTTTT	13840	42.902817	1
GCGTAAG	175	42.42857	1
TAATACG	75	42.0	1
TCACGAC	685	41.386864	25
CGACGGT	680	41.360294	28
CACGACG	710	40.880283	26
CTCACGA	695	40.791367	24
ACGGGTA	305	40.57377	5
ATTGGGC	555	40.135136	4
CATATGC	1250	39.96	33
ACGGTCT	705	39.893616	30
TATAGCG	140	38.57143	1
ATACCGG	105	38.57143	2
ACGACGG	735	38.57143	27
AGGGCGA	1610	38.152176	6
CGGGTAC	195	38.076927	6
GGTACCT	1395	38.064518	8
CGCATCG	125	37.800003	21
ATAGGGC	880	37.585228	4