FastQCFastQC Report
Thu 26 May 2016
SRR1545036_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545036_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2681049
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC176660.6589211909219115No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT106980.39902291976013865No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG56910.2122676609043699No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC31380.11704373922296833No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30070.11215759204699353No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCATA302.1665892E-645.00000425
ACATTCG253.8922015E-545.00000427
TTCGTAC253.8922015E-545.00000433
TCTACGA600.045.00000416
CGGATGG502.1827873E-1145.0000042
CTCGCTA253.8922015E-545.00000411
AGCGAAT253.8922015E-545.00000424
ACTCGCG302.1665892E-645.0000041
TCGTACA253.8922015E-545.00000434
TCGAGGT302.1665892E-645.0000043
AATCGTC502.1827873E-1145.00000429
TACCGTT302.1665892E-645.00000418
TACCGGC302.1665892E-645.00000434
AAGTCGA253.8922015E-545.00000411
CGTATCT351.2127384E-745.043
GTATTCA453.8562575E-1045.025
GCGAATC207.034971E-445.033
CGCATTA453.8562575E-1045.013
CGACACT207.034971E-445.044
ACTTACG351.2127384E-745.08