SRR1545036_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545036_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2681049
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	17666	0.6589211909219115	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10698	0.39902291976013865	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	5691	0.2122676609043699	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	3138	0.11704373922296833	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3007	0.11215759204699353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	30	2.1665892E-6	45.000004	25
ACATTCG	25	3.8922015E-5	45.000004	27
TTCGTAC	25	3.8922015E-5	45.000004	33
TCTACGA	60	0.0	45.000004	16
CGGATGG	50	2.1827873E-11	45.000004	2
CTCGCTA	25	3.8922015E-5	45.000004	11
AGCGAAT	25	3.8922015E-5	45.000004	24
ACTCGCG	30	2.1665892E-6	45.000004	1
TCGTACA	25	3.8922015E-5	45.000004	34
TCGAGGT	30	2.1665892E-6	45.000004	3
AATCGTC	50	2.1827873E-11	45.000004	29
TACCGTT	30	2.1665892E-6	45.000004	18
TACCGGC	30	2.1665892E-6	45.000004	34
AAGTCGA	25	3.8922015E-5	45.000004	11
CGTATCT	35	1.2127384E-7	45.0	43
GTATTCA	45	3.8562575E-10	45.0	25
GCGAATC	20	7.034971E-4	45.0	33
CGCATTA	45	3.8562575E-10	45.0	13
CGACACT	20	7.034971E-4	45.0	44
ACTTACG	35	1.2127384E-7	45.0	8