SRR1545035_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545035_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1188855
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6256	0.5262206072229162	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4660	0.3919737899070955	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGC	20	7.033384E-4	45.0	22
ATCTACG	25	3.8908875E-5	45.0	1
CATGCGA	20	7.033384E-4	45.0	24
CGACGAA	20	7.033384E-4	45.0	19
TCCGATC	20	7.033384E-4	45.0	13
CTATACG	20	7.033384E-4	45.0	1
GAATCGT	20	7.033384E-4	45.0	28
CGCGAAC	20	7.033384E-4	45.0	20
CACAACG	40	6.8157533E-9	45.0	12
ATACCGG	55	1.8189894E-12	45.0	2
TACCGGT	20	7.033384E-4	45.0	40
TATTACG	30	2.165565E-6	44.999996	1
CGAATGT	30	2.165565E-6	44.999996	32
CGTTTTT	6065	0.0	42.737015	1
ATTGCGG	250	0.0	42.300003	2
GGCACCG	550	0.0	42.136364	8
CGGGTAC	145	0.0	41.896553	6
TGTTGCG	60	3.6379788E-12	41.249996	1
GGTACCT	1220	0.0	40.573772	8
GTAGGGT	355	0.0	40.56338	4