SRR1545034_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545034_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	144185
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	675	0.46814855914276793	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	487	0.3377605160037452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	25	3.8737926E-5	45.000004	5
ATGGGAC	25	3.8737926E-5	45.000004	5
CGACGGG	25	3.8737926E-5	45.000004	3
CTATAGG	25	3.8737926E-5	45.000004	2
GCGATTG	35	1.202061E-7	45.000004	9
TAGATGT	25	3.8737926E-5	45.000004	37
CTAGGGC	50	2.1827873E-11	45.000004	4
TCGCCCT	20	7.0127513E-4	45.0	16
TCGTTTC	20	7.0127513E-4	45.0	41
ACACGGG	20	7.0127513E-4	45.0	3
TCCGCAA	20	7.0127513E-4	45.0	32
TACTTAA	20	7.0127513E-4	45.0	34
CACGGGC	20	7.0127513E-4	45.0	4
CCTAGGG	20	7.0127513E-4	45.0	3
GGGTCAA	20	7.0127513E-4	45.0	7
GGGTAGT	20	7.0127513E-4	45.0	7
GGACTAA	45	3.8016879E-10	45.0	8
GGGTAAT	20	7.0127513E-4	45.0	7
TAAGTTC	20	7.0127513E-4	45.0	22
CTAAGTT	20	7.0127513E-4	45.0	21