SRR1545033_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545033_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1849715
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	11476	0.6204199025255241	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8072	0.4363915522120975	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAACCCCAGTCGAATGC	3445	0.18624490799934043	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG	2830	0.15299654271063381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	35	1.2124656E-7	45.000004	34
ACGCATG	35	1.2124656E-7	45.000004	1
TTAGACG	70	0.0	45.000004	1
AGTATAT	35	1.2124656E-7	45.000004	32
ATATCGA	35	1.2124656E-7	45.000004	1
CGCGTCA	35	1.2124656E-7	45.000004	39
GTGAACC	35	1.2124656E-7	45.000004	24
ATCGCCT	70	0.0	45.000004	36
AACGTTG	40	6.8193913E-9	45.0	1
ACTATCG	25	3.891731E-5	45.0	26
ACCGGTA	25	3.891731E-5	45.0	41
ACACGTG	40	6.8193913E-9	45.0	42
CAAGTCG	40	6.8193913E-9	45.0	1
ACGTTAG	75	0.0	45.0	1
CGCATGG	85	0.0	45.0	2
CGCATCG	85	0.0	45.0	21
CGTCTAC	55	1.8189894E-12	45.0	42
TGACGTA	20	7.034402E-4	45.0	19
TGCGGCA	55	1.8189894E-12	45.0	23
ACCTCGT	50	2.1827873E-11	45.0	39