##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545033_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1849715 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.879535496008845 31.0 31.0 33.0 28.0 34.0 2 31.14673233444071 31.0 31.0 34.0 28.0 34.0 3 31.231031266978967 31.0 31.0 34.0 28.0 34.0 4 35.07273228578457 35.0 35.0 37.0 32.0 37.0 5 34.89799834028486 35.0 35.0 37.0 32.0 37.0 6 34.963394901376695 36.0 35.0 37.0 32.0 37.0 7 35.49124216433342 36.0 35.0 37.0 35.0 37.0 8 35.41940244848531 37.0 35.0 37.0 35.0 37.0 9 37.08054646256315 39.0 37.0 39.0 33.0 39.0 10 36.52781374427953 39.0 35.0 39.0 32.0 39.0 11 36.08852228586566 38.0 35.0 39.0 31.0 39.0 12 34.64117553244689 35.0 33.0 39.0 30.0 39.0 13 33.734225002230076 35.0 33.0 39.0 24.0 39.0 14 34.58194316421719 35.0 33.0 40.0 25.0 41.0 15 35.23191248381507 35.0 33.0 40.0 29.0 41.0 16 35.52987135856064 35.0 34.0 40.0 30.0 41.0 17 35.33020438283736 35.0 34.0 40.0 30.0 41.0 18 35.348967273336704 36.0 34.0 39.0 30.0 41.0 19 35.22398639790454 36.0 34.0 39.0 29.0 41.0 20 34.72610158862311 35.0 34.0 39.0 28.0 41.0 21 34.659848679391146 35.0 33.0 39.0 29.0 41.0 22 34.50047007241656 35.0 33.0 39.0 27.0 41.0 23 34.203223199249614 35.0 33.0 39.0 26.0 41.0 24 34.371383159027204 35.0 33.0 39.0 27.0 41.0 25 34.479723633100235 35.0 33.0 38.0 28.0 41.0 26 34.12133490835075 35.0 33.0 38.0 26.0 41.0 27 33.85323685000122 35.0 33.0 38.0 24.0 41.0 28 34.02289758151932 35.0 33.0 38.0 25.0 41.0 29 34.10439446076828 35.0 33.0 38.0 25.0 41.0 30 34.16174924245087 35.0 33.0 38.0 26.0 41.0 31 33.918869663704946 35.0 33.0 38.0 25.0 41.0 32 33.36447777089984 35.0 32.0 38.0 23.0 41.0 33 32.94325558261678 35.0 32.0 38.0 22.0 41.0 34 32.59423695001662 35.0 32.0 38.0 18.0 41.0 35 32.22351551455224 35.0 31.0 38.0 18.0 41.0 36 31.949528981491742 35.0 31.0 38.0 16.0 40.0 37 31.88137307639285 35.0 31.0 38.0 16.0 40.0 38 31.92322979486029 35.0 31.0 38.0 17.0 40.0 39 31.907676588014912 35.0 31.0 38.0 15.0 40.0 40 31.759416450642398 35.0 30.0 38.0 15.0 40.0 41 31.786876356627914 35.0 31.0 38.0 15.0 40.0 42 31.76455453948311 35.0 31.0 38.0 15.0 40.0 43 31.541681286035956 35.0 30.0 38.0 14.0 40.0 44 31.655010636773774 35.0 30.0 38.0 15.0 40.0 45 31.73340703838159 35.0 30.0 37.0 18.0 40.0 46 31.6403051280873 35.0 30.0 37.0 17.0 40.0 47 31.4064939733959 35.0 30.0 37.0 14.0 40.0 48 31.636585095541747 35.0 30.0 37.0 18.0 40.0 49 31.748490443122318 35.0 30.0 37.0 18.0 40.0 50 31.441928621436276 35.0 30.0 37.0 15.0 40.0 51 31.411664499666166 35.0 30.0 36.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 4.0 13 9.0 14 23.0 15 77.0 16 303.0 17 812.0 18 1933.0 19 3876.0 20 7932.0 21 14595.0 22 23863.0 23 33979.0 24 41366.0 25 46430.0 26 51995.0 27 55784.0 28 55835.0 29 58762.0 30 67659.0 31 81588.0 32 100367.0 33 129102.0 34 227600.0 35 304412.0 36 98806.0 37 110373.0 38 144501.0 39 187643.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.042055127411516 22.42972566043958 27.474286579283834 16.053932632865063 2 29.622130976934287 29.667975877364896 29.051394404002778 11.658498741698045 3 26.401094222623485 28.321444114363565 32.08910561897373 13.188356044039217 4 24.00591442465461 25.788891802250618 36.52973566198036 13.675458111114413 5 26.23717707863103 30.323211954274036 30.46680164241518 12.97280932467975 6 19.704711266330218 42.219368929808105 27.872942588452815 10.202977215408861 7 79.84305690336079 5.36958396293483 13.30507672803648 1.4822824056679003 8 82.5943996777882 8.238728669011172 7.777035921750107 1.3898357314505208 9 79.6956828484388 4.121013237174376 9.168655711825876 7.0146482025609345 10 64.90324185077161 14.608250460206031 12.430077065926373 8.05843062309599 11 61.47103743009058 13.97826151596327 16.102210340511917 8.448490713434232 12 49.37403870325969 18.23886382496763 19.101753513379087 13.285343958393591 13 24.382567044112204 45.79008117466745 20.278367207921217 9.54898457329913 14 11.831876802642569 52.3828265435486 26.690003595148443 9.095293058660388 15 10.211302822326683 19.246911010615147 56.78653197925085 13.755254187807312 16 12.349415991112146 12.524740297829664 54.0046439586639 21.121199752394286 17 12.505494089630023 16.977318127387193 29.35846873707571 41.15871904590707 18 20.475478654819796 18.54058598216482 37.26952530524973 23.714410057765654 19 30.265743641588028 21.142662518279842 25.85982164819986 22.73177219193227 20 38.64730512538418 18.02083023600933 23.909088697447984 19.422775941158502 21 20.224575137250874 32.30995045182637 27.95733396766529 19.508140443257474 22 20.669941044971793 22.69749664137448 30.11512584371106 26.517436469942666 23 21.221107035408156 28.792922152872197 23.438367532295516 26.547603279424127 24 18.73375087513482 24.259629186117863 42.42880659993566 14.577813338811655 25 13.047145100731736 25.088351448736695 41.129687546459856 20.734815904071706 26 13.018924537023272 33.980856510327264 33.43115020422065 19.569068748428812 27 18.962218503931684 35.60489048312848 29.40058333310807 16.03230767983176 28 11.299794833258096 32.537877456797396 41.82298354070762 14.339344169236881 29 12.12284054570569 21.84217568652468 46.13570198652225 19.89928178124738 30 15.257431550265851 34.766599178792404 33.84099712658436 16.134972144357373 31 31.322501033943066 24.127662910232118 24.157397220652914 20.392438835171905 32 37.38905723314132 23.421229757016622 25.849820107421955 13.339892902420104 33 35.113409363064044 24.81355235806597 23.27007133531382 16.802966943556168 34 19.61458927456392 26.437748518014935 27.338589998999847 26.609072208421296 35 21.86817969254723 24.77722243697002 32.27951333043199 21.075084540050764 36 32.879335465193286 25.82889796536223 25.198854958736888 16.092911610707596 37 19.848787515914616 33.90295261702478 28.589539469593966 17.658720397466638 38 20.61252679466837 34.73605393263286 19.99918906426125 24.652230208437516 39 20.185217722730258 34.096225634759946 26.26718170096474 19.451374941545048 40 24.07689833298643 24.835501685394775 22.920774281443357 28.166825700175437 41 15.76788856661702 22.24131825713691 26.10461611653687 35.8861770597092 42 22.31424841124173 23.720032545554314 22.282351605517604 31.683367437686343 43 23.504810200490343 24.239139543118803 24.003373492673198 28.252676763717655 44 17.673911926972533 30.90308506986211 30.080904355535854 21.342098647629502 45 15.3467426062934 41.64544267630419 21.178019316489298 21.829795400913113 46 23.22287487531863 34.9646296861949 23.559521331664605 18.252974106821863 47 21.436815941915377 29.43767012756019 25.093757686995023 24.031756243529408 48 24.911891831984928 23.211521774976145 31.48160662588561 20.394979767153316 49 22.311815604025483 21.04372835815247 34.43644020835642 22.208015829465623 50 20.564573461317014 34.72453864514263 25.968757349105132 18.742130544435224 51 17.352024501071785 36.64602384691696 22.727663450855943 23.274288201155315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2189.0 1 2514.0 2 2839.0 3 9517.5 4 16196.0 5 12539.0 6 8882.0 7 9801.5 8 10721.0 9 11796.5 10 12872.0 11 13015.5 12 13159.0 13 12662.5 14 12166.0 15 11264.0 16 10362.0 17 9669.0 18 8976.0 19 8400.0 20 7824.0 21 7705.0 22 7586.0 23 7246.0 24 6906.0 25 6917.0 26 7661.0 27 8394.0 28 10238.0 29 12082.0 30 14862.0 31 17642.0 32 19851.0 33 22060.0 34 27082.5 35 32105.0 36 31249.5 37 30394.0 38 44723.5 39 59053.0 40 98851.5 41 138650.0 42 175256.5 43 211863.0 44 209830.5 45 207798.0 46 195206.0 47 182614.0 48 167515.0 49 152416.0 50 142990.5 51 133565.0 52 124300.0 53 115035.0 54 114845.0 55 114655.0 56 105753.5 57 96852.0 58 83032.5 59 69213.0 60 58069.0 61 46925.0 62 40587.0 63 34249.0 64 25508.5 65 16768.0 66 12947.0 67 9126.0 68 6995.0 69 4864.0 70 3574.5 71 2285.0 72 1909.0 73 1533.0 74 1325.0 75 777.0 76 437.0 77 329.0 78 221.0 79 170.0 80 119.0 81 75.5 82 32.0 83 27.5 84 23.0 85 15.0 86 7.0 87 5.0 88 3.0 89 3.0 90 3.0 91 2.0 92 1.0 93 2.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1849715.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.295660952432282 #Duplication Level Percentage of deduplicated Percentage of total 1 82.96921135897765 13.520381377965931 2 6.674408176123175 2.175277853924904 3 2.2883429483555733 1.1187018248787506 4 1.1477726445043626 0.7481485546127873 5 0.6709553641744053 0.546683056440092 6 0.4465840646741591 0.4366429502813513 7 0.31696502976151447 0.3615608261139873 8 0.25020615333785423 0.3261819714404765 9 0.18559779026476728 0.27219947973077563 >10 2.4092895658948956 9.340442322249096 >50 0.9120295090765782 10.763036414944716 >100 1.6978346367054586 55.73639990843438 >500 0.026785007086656775 2.677255483515821 >1k 0.003348125885832097 0.9105505760015394 >5k 3.3481258858320966E-4 0.44040770863948864 >10k+ 3.3481258858320966E-4 0.6261296908259132 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11476 0.6204199025255241 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8072 0.4363915522120975 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAACCCCAGTCGAATGC 3445 0.18624490799934043 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG 2830 0.15299654271063381 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.4062382583262825E-5 0.0 0.0 0.009893416012737098 0.0 2 5.4062382583262825E-5 0.0 0.0 0.0408711612329467 0.0 3 5.4062382583262825E-5 0.0 0.0 0.054386756878762404 0.0 4 5.4062382583262825E-5 0.0 0.0 0.09779885009312246 0.0 5 5.4062382583262825E-5 0.0 0.0 0.21024860586630914 0.0 6 5.4062382583262825E-5 0.0 0.0 0.27085253674214677 0.0 7 5.4062382583262825E-5 0.0 0.0 0.3398901993009734 0.0 8 5.4062382583262825E-5 0.0 0.0 0.49515736208010425 0.0 9 5.4062382583262825E-5 0.0 0.0 0.562573153161433 0.0 10 5.4062382583262825E-5 0.0 0.0 0.8139632321736051 0.0 11 5.4062382583262825E-5 0.0 0.0 0.8788921536561037 0.0 12 5.4062382583262825E-5 0.0 0.0 1.0480533487591333 0.0 13 5.4062382583262825E-5 0.0 0.0 1.0831398350556707 0.0 14 5.4062382583262825E-5 0.0 0.0 1.0993585498306495 0.0 15 5.4062382583262825E-5 0.0 0.0 1.138770026733848 0.0 16 5.4062382583262825E-5 0.0 0.0 1.1836418042779564 0.0 17 5.4062382583262825E-5 0.0 0.0 1.2259726498406511 0.0 18 5.4062382583262825E-5 0.0 0.0 1.3098234052272917 0.0 19 1.0812476516652565E-4 0.0 0.0 1.3690757765385477 0.0 20 1.6218714774978848E-4 0.0 0.0 1.402810703270504 0.0 21 1.6218714774978848E-4 0.0 0.0 1.4332478246648808 0.0 22 1.6218714774978848E-4 0.0 0.0 1.4639552579721742 0.0 23 1.6218714774978848E-4 0.0 0.0 1.5032586101102061 0.0 24 1.6218714774978848E-4 0.0 0.0 1.5276407446552578 0.0 25 1.6218714774978848E-4 0.0 0.0 1.5484006995672306 0.0 26 1.6218714774978848E-4 0.0 0.0 1.5729990836426153 0.0 27 1.6218714774978848E-4 0.0 0.0 1.5995437134909973 0.0 28 1.6218714774978848E-4 0.0 0.0 1.6221417894108012 0.0 29 1.6218714774978848E-4 0.0 0.0 1.649281105467599 0.0 30 1.6218714774978848E-4 0.0 0.0 1.6933419472729583 0.0 31 1.6218714774978848E-4 0.0 0.0 1.7325912370284071 0.0 32 2.162495303330513E-4 0.0 0.0 1.7641096060744492 0.0 33 2.162495303330513E-4 0.0 0.0 1.7963848484766571 0.0 34 2.162495303330513E-4 0.0 0.0 1.8293088394698642 0.0 35 2.162495303330513E-4 0.0 0.0 1.8763431123173029 0.0 36 2.162495303330513E-4 0.0 0.0 1.9175386478457492 0.0 37 2.162495303330513E-4 0.0 0.0 1.958626058609029 0.0 38 2.162495303330513E-4 0.0 0.0 1.9991187831638928 0.0 39 2.162495303330513E-4 0.0 0.0 2.0383140105367583 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCG 35 1.2124656E-7 45.000004 34 ACGCATG 35 1.2124656E-7 45.000004 1 TTAGACG 70 0.0 45.000004 1 AGTATAT 35 1.2124656E-7 45.000004 32 ATATCGA 35 1.2124656E-7 45.000004 1 CGCGTCA 35 1.2124656E-7 45.000004 39 GTGAACC 35 1.2124656E-7 45.000004 24 ATCGCCT 70 0.0 45.000004 36 AACGTTG 40 6.8193913E-9 45.0 1 ACTATCG 25 3.891731E-5 45.0 26 ACCGGTA 25 3.891731E-5 45.0 41 ACACGTG 40 6.8193913E-9 45.0 42 CAAGTCG 40 6.8193913E-9 45.0 1 ACGTTAG 75 0.0 45.0 1 CGCATGG 85 0.0 45.0 2 CGCATCG 85 0.0 45.0 21 CGTCTAC 55 1.8189894E-12 45.0 42 TGACGTA 20 7.034402E-4 45.0 19 TGCGGCA 55 1.8189894E-12 45.0 23 ACCTCGT 50 2.1827873E-11 45.0 39 >>END_MODULE