SRR1545028_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545028_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	772688
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3764	0.4871306400513532	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2689	0.3480059221833392	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	800	0.10353467376224298	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	787	0.10185223531360653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATTAG	30	2.1645737E-6	45.000004	1
TCACGAT	25	3.889614E-5	45.0	28
CTATGCG	25	3.889614E-5	45.0	1
TCCGCAA	25	3.889614E-5	45.0	32
CACGGGC	35	1.2112287E-7	45.0	4
TCCGATT	20	7.03185E-4	45.0	35
CTATCGG	20	7.03185E-4	45.0	2
GCGAAGT	40	6.8102963E-9	45.0	43
TTTGTCG	25	3.889614E-5	45.0	1
CGTTGGC	25	3.889614E-5	45.0	26
CGCATCG	35	1.2112287E-7	45.0	21
GAGTACG	25	3.889614E-5	45.0	1
ATTCGAT	50	2.1827873E-11	45.0	14
TATGCGT	40	6.8102963E-9	45.0	20
CATTCGG	25	3.889614E-5	45.0	45
GTTACGT	40	6.8102963E-9	45.0	25
ACGATTG	25	3.889614E-5	45.0	1
GTATGCG	25	3.889614E-5	45.0	1
GTATAGA	25	3.889614E-5	45.0	9
GAGCACG	20	7.03185E-4	45.0	1