SRR1545025_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545025_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2691754
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	12182	0.4525673594243753	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10429	0.3874425374681341	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3167	0.11765562529116702	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTCA	25	3.892205E-5	45.000004	15
CTATACG	85	0.0	45.000004	1
GTAATCG	50	2.1827873E-11	45.000004	14
GTGTACC	25	3.892205E-5	45.000004	27
CGTACTC	30	2.1665928E-6	45.000004	43
CGAGAAT	25	3.892205E-5	45.000004	33
GAACCTA	30	2.1665928E-6	45.000004	19
ACGTAAA	30	2.1665928E-6	45.000004	2
GCTACGT	25	3.892205E-5	45.000004	39
CCACGTT	30	2.1665928E-6	45.000004	35
TATGTCG	30	2.1665928E-6	45.000004	1
TCACGGT	20	7.034976E-4	45.0	17
TCGCCTA	40	6.8212103E-9	45.0	35
ACTATCG	70	0.0	45.0	24
CGTGAAC	20	7.034976E-4	45.0	45
TAAGTCG	55	1.8189894E-12	45.0	1
TAACGCG	70	0.0	45.0	1
CATTACG	55	1.8189894E-12	45.0	27
CCGTAAG	20	7.034976E-4	45.0	42
CGGATTC	20	7.034976E-4	45.0	28