SRR1545024_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545024_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1550540
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7728	0.49840700659125203	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4652	0.3000245075909038	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2439	0.15730003740632295	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.0340483E-4	45.000004	41
TCCGATT	20	7.0340483E-4	45.000004	11
ACGCAAC	20	7.0340483E-4	45.000004	21
CGACCGG	40	6.8175723E-9	45.000004	2
CGTTACC	20	7.0340483E-4	45.000004	40
CATAGGA	20	7.0340483E-4	45.000004	13
TATTCCG	20	7.0340483E-4	45.000004	1
ACGTCAT	20	7.0340483E-4	45.000004	32
TCGAGTA	20	7.0340483E-4	45.000004	24
ACGAGTT	20	7.0340483E-4	45.000004	10
ATACAAC	20	7.0340483E-4	45.000004	10
GTCGACC	25	3.8914375E-5	45.0	9
CACGGTA	50	2.1827873E-11	45.0	44
CGACGGT	175	0.0	45.0	28
TCCGAAC	45	3.8562575E-10	45.0	22
TCTTCGA	25	3.8914375E-5	45.0	15
CGTTCGA	45	3.8562575E-10	45.0	14
CCGTCTA	25	3.8914375E-5	45.0	30
CTGCGTA	25	3.8914375E-5	45.0	25
ATCGTAC	25	3.8914375E-5	45.0	10