SRR1545023_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545023_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3473676
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16912	0.4868617568247586	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	9179	0.2642445639719997	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3675	0.10579570460802909	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAG	40	6.8212103E-9	45.000004	1
TCCGCGA	25	3.892441E-5	45.0	18
CGTTGTC	25	3.892441E-5	45.0	21
CGTAAGG	445	0.0	43.483147	2
CGTTTTT	17955	0.0	43.45865	1
CTATGCG	135	0.0	43.333332	1
ACTACGG	95	0.0	42.63158	2
GACGGTC	190	0.0	42.63158	29
TAGTACG	180	0.0	42.5	1
CGCGTCA	80	0.0	42.187504	39
CGACGGT	195	0.0	41.53846	28
ACGTATA	175	0.0	41.142857	13
TGCGGTA	55	6.184564E-11	40.909092	4
CCGAACC	110	0.0	40.909092	30
CGCCTAT	50	1.0822987E-9	40.5	28
TACGGGT	185	0.0	40.135136	4
TACGATA	45	1.9303116E-8	40.0	44
ACTACGA	45	1.9303116E-8	40.0	42
GCGATAC	135	0.0	40.0	9
TACTACG	90	0.0	40.0	1