##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545021_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 473524 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91113861177047 34.0 33.0 34.0 31.0 34.0 2 33.26239852679062 34.0 33.0 34.0 31.0 34.0 3 33.386121928349986 34.0 34.0 34.0 31.0 34.0 4 36.60922783216901 37.0 37.0 37.0 35.0 37.0 5 36.57608484469636 37.0 37.0 37.0 35.0 37.0 6 36.37873687500528 37.0 37.0 37.0 35.0 37.0 7 36.24794941755856 37.0 37.0 37.0 35.0 37.0 8 36.38109156030106 37.0 37.0 37.0 35.0 37.0 9 38.2776670242691 39.0 39.0 39.0 37.0 39.0 10 38.18593144170095 39.0 39.0 39.0 35.0 39.0 11 37.6381281624585 39.0 37.0 39.0 35.0 39.0 12 37.61099120635913 39.0 37.0 39.0 35.0 39.0 13 37.53158023669339 39.0 37.0 39.0 35.0 39.0 14 38.82905195935159 41.0 37.0 41.0 35.0 41.0 15 38.856683082589264 41.0 37.0 41.0 35.0 41.0 16 38.8693878240596 41.0 37.0 41.0 35.0 41.0 17 38.92369130181363 41.0 37.0 41.0 35.0 41.0 18 38.93354296719913 41.0 37.0 41.0 35.0 41.0 19 38.924966844341576 41.0 37.0 41.0 35.0 41.0 20 38.876466662724596 41.0 35.0 41.0 35.0 41.0 21 38.82688311468901 41.0 35.0 41.0 35.0 41.0 22 38.77546439040049 41.0 35.0 41.0 35.0 41.0 23 38.77013414314797 41.0 35.0 41.0 35.0 41.0 24 38.744648634493714 41.0 35.0 41.0 35.0 41.0 25 38.671501338897286 41.0 35.0 41.0 35.0 41.0 26 38.59672160228415 40.0 35.0 41.0 35.0 41.0 27 38.67940590128484 41.0 36.0 41.0 35.0 41.0 28 38.69719169461315 41.0 36.0 41.0 35.0 41.0 29 38.678793471925395 41.0 36.0 41.0 35.0 41.0 30 38.62899874135208 41.0 35.0 41.0 35.0 41.0 31 38.559781552782965 41.0 35.0 41.0 35.0 41.0 32 38.476058235696605 40.0 35.0 41.0 35.0 41.0 33 38.40148968162121 40.0 35.0 41.0 35.0 41.0 34 38.245024539410885 40.0 35.0 41.0 35.0 41.0 35 38.22519238729188 40.0 35.0 41.0 35.0 41.0 36 38.17908701565285 40.0 35.0 41.0 35.0 41.0 37 38.14032868450174 40.0 35.0 41.0 35.0 41.0 38 38.07033012054299 40.0 35.0 41.0 35.0 41.0 39 38.0418965036619 40.0 35.0 41.0 35.0 41.0 40 37.98882422010289 40.0 35.0 41.0 35.0 41.0 41 37.95253038916718 40.0 35.0 41.0 35.0 41.0 42 37.90691918466646 40.0 35.0 41.0 35.0 41.0 43 37.86434267323303 40.0 35.0 41.0 35.0 41.0 44 37.73716643718164 40.0 35.0 41.0 35.0 41.0 45 37.725720343636226 40.0 35.0 41.0 35.0 41.0 46 37.66980343129387 40.0 35.0 41.0 35.0 41.0 47 37.58233162416266 40.0 35.0 41.0 35.0 41.0 48 37.52102322163185 39.0 35.0 41.0 35.0 41.0 49 37.4992714202448 39.0 35.0 41.0 35.0 41.0 50 37.44219300394489 39.0 35.0 41.0 35.0 41.0 51 37.375366401702976 39.0 35.0 41.0 35.0 41.0 52 36.932763703634876 38.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 4.0 15 7.0 16 10.0 17 14.0 18 32.0 19 65.0 20 109.0 21 171.0 22 295.0 23 475.0 24 853.0 25 1418.0 26 2058.0 27 2218.0 28 2201.0 29 2274.0 30 2663.0 31 3088.0 32 4276.0 33 6319.0 34 24617.0 35 76402.0 36 16324.0 37 26303.0 38 48426.0 39 251334.0 40 1566.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.77453307540906 20.80929372112079 22.47510157880065 20.9410716246695 2 30.147363174833796 23.051629906826264 24.793041113016447 22.00796580532349 3 30.337849823873764 23.051418724288524 24.923340738800988 21.68739071303672 4 28.11811016970629 25.298612108361983 22.60624593473615 23.97703178719558 5 24.143865992008852 32.7717285713079 22.88120559887144 20.203199837811813 6 82.55230991459777 2.6824405943521343 11.18802848430069 3.577221006749394 7 84.8554666711719 2.4121269460470853 7.3140960120289575 5.418310370752064 8 73.04423851800543 4.8301670031508435 14.0896765528252 8.035917926018534 9 48.086686208090825 18.57139236870782 16.955423589934195 16.386497833267164 10 39.11586318750475 18.802637247531276 28.111985876111877 13.969513688852095 11 36.88725386675227 17.755805407962427 25.232934339125368 20.12400638615994 12 24.430440695719753 24.05369104839459 31.663653795794932 19.852214460090725 13 17.924540255615344 26.610900397867905 34.66181228406586 20.802747062450898 14 18.608138130274284 21.65085613400799 39.37667362161157 20.364332114106148 15 21.318454819607876 19.220989854790886 38.853363293096024 20.607192032505218 16 21.391735160203073 22.396752857299735 28.83782025831848 27.373691724178713 17 21.068414694925703 22.644047608991308 31.788251493060542 24.499286203022443 18 22.547537189244895 27.688564887946544 29.86754631233053 19.896351610478032 19 24.66337503484512 24.323371149086427 25.88591074581225 25.12734307025621 20 21.804808204019228 31.20010812545932 26.937177418673603 20.05790625184785 21 20.812461459186864 23.21043917520548 29.73809141669694 26.239007948910718 22 19.401973289632625 26.171429536834456 27.86532467203352 26.561272501499396 23 21.705974776357692 21.469872699166253 33.990251814058 22.833900710418057 24 24.035740532686834 21.398915366486175 28.90392039263057 25.661423708196416 25 17.176531706946214 25.489098757401944 31.74031305699394 25.594056478657894 26 17.138730032691058 25.399768543938638 30.292656760797765 27.16884466257254 27 22.09074936011691 24.95839704006555 31.10233061048648 21.84852298933106 28 20.25071590880293 25.297767378211027 28.563494141796404 25.888022571189634 29 22.085258614135714 24.724195605713756 30.733817082133115 22.456728698017418 30 26.258225559844906 22.187893327476537 24.88047068364011 26.67341042903844 31 27.279081947271944 22.222316081127882 29.02239379630177 21.4762081752984 32 23.36396888014124 25.28235105295613 27.08310455225078 24.270575514651842 33 21.970586496143806 20.83146788758331 32.60573909664558 24.592206519627304 34 18.5735041940852 23.37241618165077 33.90894653702875 24.145133087235283 35 24.945514905263515 24.122958920772756 29.774414813187928 21.157111360775797 36 25.27770503712589 25.326488203343445 27.034532568570967 22.361274190959698 37 21.931940091737694 24.510901242598052 32.01083788783673 21.546320777827525 38 21.945878139228423 23.301670031508433 29.756886662555647 24.995565166707497 39 27.278237217120992 20.314915400275382 29.977783597029926 22.4290637855737 40 20.526097938013702 18.539292622971594 33.199373210227996 27.735236228786714 41 20.58903033425972 22.58090403020755 28.2895903903498 28.54047524518293 42 20.028129514026745 20.101621037159678 31.31710325136635 28.553146197447226 43 23.9413419383178 23.437460403274173 28.425380762115545 24.19581689629248 44 19.7848472305522 24.45198131456906 29.26039651633286 26.50277493854588 45 21.332604049636345 23.212339818045123 28.746589402015527 26.708466730303005 46 23.26471308740423 20.20953531394396 31.249947204365565 25.275804394286244 47 20.57319164392935 19.53734129632289 34.384951977090914 25.504515082656848 48 21.810298950000423 18.234556221015197 29.99784593811507 29.95729889086931 49 21.378219477787823 20.485762073305683 33.20803169427526 24.92798675463123 50 20.615850516552488 21.05553256012367 32.01337207828959 26.315244845034254 51 20.3172384081905 18.50043503602774 31.465142210320913 29.717184345460844 52 20.856598609574174 17.660350900904707 36.51895152093664 24.964098968584487 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 74.0 1 202.5 2 331.0 3 1563.0 4 2795.0 5 1790.5 6 786.0 7 807.0 8 828.0 9 821.0 10 814.0 11 833.5 12 853.0 13 793.0 14 709.5 15 686.0 16 646.5 17 607.0 18 605.5 19 604.0 20 663.0 21 722.0 22 739.5 23 757.0 24 938.0 25 1119.0 26 1414.5 27 1710.0 28 2310.5 29 2911.0 30 3096.5 31 3282.0 32 3451.5 33 3621.0 34 4574.5 35 5528.0 36 6487.5 37 7447.0 38 8046.5 39 10185.5 40 11725.0 41 16358.5 42 20992.0 43 28401.5 44 35811.0 45 44701.0 46 53591.0 47 56419.0 48 59247.0 49 55896.0 50 52545.0 51 44809.0 52 37073.0 53 32898.5 54 28724.0 55 26018.0 56 23312.0 57 22485.5 58 21659.0 59 22343.0 60 23027.0 61 20358.0 62 17689.0 63 16706.0 64 12755.5 65 9788.0 66 7862.0 67 5936.0 68 4919.0 69 3902.0 70 3434.0 71 2966.0 72 2464.5 73 1963.0 74 1668.5 75 1374.0 76 1101.5 77 829.0 78 610.5 79 392.0 80 321.5 81 251.0 82 177.0 83 103.0 84 65.0 85 27.0 86 22.5 87 18.0 88 10.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 473524.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.33785643522874 #Duplication Level Percentage of deduplicated Percentage of total 1 71.20433032113095 25.874127327758618 2 10.308611403185171 7.491856824310092 3 3.7899523137260283 4.1315622921761825 4 2.1814280741740912 3.1707368073246256 5 1.6634602925714554 3.0223290648582575 6 1.4617740991033308 3.18706424123716 7 1.2761492946043536 3.2460770900076 8 1.1328433346514408 3.2932078766535873 9 1.0668635152787393 3.4890779928764064 >10 5.730020504267045 31.521302370334197 >50 0.11935710945746171 2.8891975938097314 >100 0.05589406101422589 4.164540526988188 >500 0.004657838417852158 1.1346489964558855 >1k 0.004657838417852158 3.384270995209462 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT 2754 0.5815967089313319 TruSeq Adapter, Index 22 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 2717 0.573782955035014 No Hit GCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT 2232 0.4713594242319291 TruSeq Adapter, Index 22 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 2050 0.432924202363555 No Hit CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCTT 2028 0.42827818653331196 TruSeq Adapter, Index 20 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1498 0.31635144153200256 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1402 0.29607791790912397 No Hit TGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCTTG 1315 0.2777050371258901 TruSeq Adapter, Index 22 (96% over 25bp) GGGGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT 905 0.19112019665317914 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 695 0.14677186372813203 No Hit TCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT 664 0.14022520505824415 TruSeq Adapter, Index 22 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC 663 0.14001402252050582 TruSeq Adapter, Index 20 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC 644 0.13600155430347774 TruSeq Adapter, Index 22 (95% over 22bp) GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCTCTAGTTGTCG 623 0.13156672101097303 No Hit ACCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC 614 0.12966607817132816 TruSeq Adapter, Index 20 (95% over 21bp) GGGCCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT 555 0.11720630844476732 No Hit AGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC 498 0.10516890379368311 TruSeq Adapter, Index 20 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.43355774997676993 0.0 2 0.0 0.0 0.0 1.7363428252844628 0.0 3 0.0 0.0 0.0 2.6693472770123585 0.0 4 0.0 0.0 0.0 3.274385247632644 0.0 5 0.0 0.0 0.0 6.6666103513232695 0.0 6 0.0 0.0 0.0 7.306071075594901 0.0 7 0.0 0.0 0.0 9.762757537104772 0.0 8 0.0 0.0 0.0 12.400216250918644 0.0 9 0.0 0.0 0.0 14.799461062163692 0.0 10 0.0 0.0 0.0 16.204247303198994 0.0 11 0.0 0.0 0.0 17.599952695111547 0.0 12 0.0 0.0 0.0 18.738860121134305 0.0 13 0.0 0.0 0.0 19.294059012848347 0.0 14 0.0 0.0 0.0 19.631951073229658 0.0 15 0.0 0.0 0.0 20.71130502361021 0.0 16 0.0 0.0 0.0 21.83733031483093 0.0 17 0.0 0.0 0.0 23.16165600898793 0.0 18 0.0 0.0 0.0 24.043131921507673 0.0 19 0.0 0.0 0.0 24.864420810772 0.0 20 0.0 0.0 0.0 25.88464365058582 0.0 21 0.0 0.0 0.0 26.80582188020037 0.0 22 0.0 0.0 0.0 27.75213083180578 0.0 23 0.0 0.0 0.0 28.457902872927242 0.0 24 0.0 0.0 0.0 29.09778596227435 0.0 25 0.0 0.0 0.0 29.728588202498713 0.0 26 0.0 0.0 0.0 30.35199905390223 0.0 27 0.0 0.0 0.0 30.899806556795433 0.0 28 0.0 0.0 0.0 31.535465995387774 0.0 29 0.0 0.0 0.0 32.23342428261292 0.0 30 0.0 0.0 0.0 33.25681486049282 0.0 31 0.0 0.0 0.0 33.87600206114157 0.0 32 0.0 0.0 0.0 34.54608425338525 0.0 33 0.0 0.0 0.0 35.24805500882743 0.0 34 0.0 0.0 0.0 36.06976626316723 0.0 35 0.0 0.0 0.0 36.64587222611737 0.0 36 0.0 0.0 0.0 37.24394117299229 0.0 37 0.0 0.0 0.0 37.95182503949113 0.0 38 0.0 0.0 0.0 38.78705197624619 0.0 39 0.0 0.0 0.0 39.482053707942995 0.0 40 0.0 0.0 0.0 40.150657622422514 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCTAAA 35 1.0178701E-7 46.000004 32 ATGGGCG 45 3.092282E-10 46.0 4 TCGTTGA 80 0.0 46.0 23 TAGACGG 25 3.4140903E-5 46.0 1 CGTTGAT 80 0.0 46.0 24 ATAGCGG 65 0.0 46.0 1 TCGATGG 45 3.092282E-10 46.0 1 AATGCGG 65 0.0 46.0 1 CGCTATG 20 6.3076767E-4 46.0 23 CTCGCGG 55 1.8189894E-12 46.0 1 CGTCGGG 40 5.5988494E-9 46.0 2 ATAACGG 30 1.859069E-6 46.0 1 TATCCGG 25 3.4140903E-5 46.0 1 TAATCGT 80 0.0 46.0 20 GGACTAA 110 0.0 43.909092 7 ACGAGGG 220 0.0 43.909092 2 CGTTTTT 1045 0.0 43.799046 1 AATCGTT 90 0.0 43.444447 21 GCGCGAC 80 0.0 43.125 8 GCCCTAG 80 0.0 43.125 19 >>END_MODULE