##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545013_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 173857 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.86134006683654 34.0 33.0 34.0 31.0 34.0 2 33.215171088883395 34.0 33.0 34.0 31.0 34.0 3 33.33727143572016 34.0 34.0 34.0 31.0 34.0 4 36.589122094594984 37.0 37.0 37.0 35.0 37.0 5 36.58437106357524 37.0 37.0 37.0 35.0 37.0 6 36.38171600798357 37.0 37.0 37.0 35.0 37.0 7 36.19567805725395 37.0 37.0 37.0 35.0 37.0 8 36.34432896000736 37.0 37.0 37.0 35.0 37.0 9 38.21934118269613 39.0 39.0 39.0 37.0 39.0 10 38.11444462978195 39.0 39.0 39.0 35.0 39.0 11 37.51323213905681 39.0 35.0 39.0 35.0 39.0 12 37.47275059387888 39.0 35.0 39.0 35.0 39.0 13 37.463927250556495 39.0 35.0 39.0 35.0 39.0 14 38.71497840178998 41.0 35.0 41.0 35.0 41.0 15 38.760032670528076 41.0 35.0 41.0 35.0 41.0 16 38.79945012280207 41.0 35.0 41.0 35.0 41.0 17 38.892687668601205 41.0 36.0 41.0 35.0 41.0 18 38.8809021207084 41.0 36.0 41.0 35.0 41.0 19 38.82562680823896 41.0 36.0 41.0 35.0 41.0 20 38.75957252224529 41.0 35.0 41.0 35.0 41.0 21 38.725947186480845 41.0 35.0 41.0 35.0 41.0 22 38.69303508055471 41.0 35.0 41.0 35.0 41.0 23 38.66911312170347 41.0 35.0 41.0 35.0 41.0 24 38.64178606555963 41.0 35.0 41.0 35.0 41.0 25 38.60534232156312 41.0 35.0 41.0 35.0 41.0 26 38.55077448707846 40.0 35.0 41.0 35.0 41.0 27 38.631495999585866 41.0 36.0 41.0 35.0 41.0 28 38.6514836906193 41.0 36.0 41.0 35.0 41.0 29 38.648728552776134 41.0 36.0 41.0 35.0 41.0 30 38.59389613302887 41.0 35.0 41.0 35.0 41.0 31 38.53558384189305 41.0 35.0 41.0 35.0 41.0 32 38.47214664925772 41.0 35.0 41.0 35.0 41.0 33 38.380531126155404 41.0 35.0 41.0 35.0 41.0 34 38.29221716698206 41.0 35.0 41.0 35.0 41.0 35 38.23313412747258 40.0 35.0 41.0 35.0 41.0 36 38.18815463283043 40.0 35.0 41.0 35.0 41.0 37 38.15192370741472 40.0 35.0 41.0 35.0 41.0 38 38.126057622068714 40.0 35.0 41.0 35.0 41.0 39 38.08204443882041 40.0 35.0 41.0 35.0 41.0 40 38.04114300833444 40.0 35.0 41.0 35.0 41.0 41 38.004020545620826 40.0 35.0 41.0 35.0 41.0 42 37.92366715173965 40.0 35.0 41.0 35.0 41.0 43 37.842399213146436 40.0 35.0 41.0 35.0 41.0 44 37.6573505812248 40.0 35.0 41.0 35.0 41.0 45 37.70098989399334 40.0 35.0 41.0 35.0 41.0 46 37.68254945156077 40.0 35.0 41.0 35.0 41.0 47 37.623719493606814 40.0 35.0 41.0 35.0 41.0 48 37.59529958529136 40.0 35.0 41.0 35.0 41.0 49 37.558407196719145 39.0 35.0 41.0 35.0 41.0 50 37.47980236631255 39.0 35.0 41.0 35.0 41.0 51 37.412114553914996 39.0 35.0 41.0 35.0 41.0 52 36.99194740505128 38.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 0.0 15 2.0 16 1.0 17 4.0 18 3.0 19 25.0 20 38.0 21 67.0 22 88.0 23 138.0 24 311.0 25 517.0 26 751.0 27 828.0 28 772.0 29 814.0 30 898.0 31 1192.0 32 1567.0 33 2386.0 34 7565.0 35 32874.0 36 5616.0 37 9121.0 38 16169.0 39 90667.0 40 1441.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.862967841386887 21.972655688295553 24.09451445728386 22.0698620130337 2 26.83239673984942 24.074958155265534 26.42516550958546 22.667479595299586 3 25.855156824286624 23.822451785087743 27.286217983745264 23.036173406880366 4 25.97824648993138 26.67307039693541 23.74307620630748 23.605606906825724 5 23.000511914964598 34.5266512133535 21.615465583784374 20.857371287897525 6 83.9747608666893 2.4002484800727033 9.65851245563883 3.966478197599176 7 84.04838459193475 2.1759261922154414 6.947088699333361 6.828600516516447 8 71.92232696986603 4.622764685920037 14.64536947031181 8.809538873902115 9 46.77349775965305 18.006177490696377 17.378650270049523 17.841674479601053 10 38.61104240841611 18.774049937592387 29.207912249722472 13.406995404269026 11 36.52024364851573 16.624007086283555 26.361895120702645 20.493854144498062 12 20.027378822825657 29.612267553219024 31.776690038364862 18.583663585590458 13 14.320389745595518 32.70388882817488 31.682359640394115 21.293361785835486 14 12.820881529072745 22.173970562013608 44.46988041896501 20.535267489948637 15 14.667801699097534 17.701904438705373 45.42008662291423 22.21020723928286 16 14.641343172837448 22.658851814997384 30.20815957942447 32.491645432740704 17 17.82902040182449 22.979230056885832 35.14037398551683 24.051375555772847 18 21.874874178203925 28.215142329615716 29.102078144682125 20.80790534749823 19 23.167315667473844 23.101744537177105 27.079151256492406 26.651788538856646 20 18.013079714938137 32.20520312670758 27.501912491300324 22.279804667053956 21 18.3852246386398 24.779560213278728 26.261237683843618 30.57397746423785 22 16.323760331766913 30.68671379351996 23.865015501245278 29.12451037346785 23 16.46180481660215 22.611686616012012 37.179406063604 23.747102503781843 24 19.085225213825154 22.61456254277941 33.56264056092076 24.737571682474677 25 14.636741690009606 29.2332204052756 30.840288282899163 25.289749621815634 26 17.351616558435957 27.597393259978027 27.02220790649787 28.028782275088147 27 20.51628637328379 26.06279873689296 33.64201613970102 19.778898750122227 28 17.25613578975825 24.223355976463417 28.898462529550144 29.62204570422819 29 18.845372921423927 29.8854805961221 25.07865659708841 26.190489885365558 30 27.42253691252006 24.811770593073618 21.05638542020166 26.709307074204663 31 25.18506588748224 26.29172250757807 20.73025532477841 27.79295628016128 32 23.51702836238978 26.802487101468447 22.114726470605152 27.56575806553662 33 17.834197070005807 28.235273816987522 25.383504834432895 28.54702427857377 34 18.84134662394957 21.751209327205693 26.600021857043433 32.80742219180131 35 22.892952253863807 24.179066704245443 26.245707679299656 26.682273362591097 36 18.824091063345165 26.906595650448356 26.186463587891197 28.082849698315282 37 17.416612503379213 27.570934733717937 28.774797678551913 26.23765508435093 38 16.35424515550136 24.911277659225686 28.961157733079485 29.77331945219347 39 22.90560633164037 21.408974041885 31.483920693443462 24.201498933031168 40 15.851533156559702 19.483253478433422 34.18671666944673 30.478496695560143 41 20.304042977849612 23.98868035224351 25.64866528238725 30.05861138751963 42 20.828612020223517 19.21234117694427 30.32147109406006 29.63757570877215 43 22.53806289076655 24.682929073894062 27.520318422611687 25.258689612727704 44 16.150054355015904 27.96378633014489 27.53067175897433 28.355487555864876 45 20.592786025296654 26.432067733827225 26.552281472704582 26.422864768171543 46 22.458112126632805 20.25975370563164 29.072743691654633 28.209390476080916 47 19.653508343063553 18.367393892681918 33.99978142956568 27.979316334688853 48 19.346359364305147 17.096234261490764 29.696819800180606 33.86058657402348 49 19.649482045589192 20.48292562278194 32.30701093427357 27.5605813973553 50 19.235923776436955 22.007166809504362 30.300189235981296 28.45672017807739 51 17.8025618755644 18.189086433103068 32.76485847564378 31.243493215688755 52 19.271585268352727 17.558683285688815 37.7534410463772 25.416290399581264 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 23.0 1 51.0 2 79.0 3 434.0 4 789.0 5 524.5 6 260.0 7 270.5 8 281.0 9 312.5 10 344.0 11 336.0 12 328.0 13 314.0 14 285.5 15 271.0 16 238.5 17 206.0 18 197.5 19 189.0 20 203.0 21 217.0 22 225.5 23 234.0 24 291.0 25 348.0 26 442.5 27 537.0 28 738.5 29 940.0 30 989.0 31 1038.0 32 1200.0 33 1362.0 34 1649.0 35 1936.0 36 2193.5 37 2451.0 38 2747.0 39 3675.0 40 4307.0 41 5708.5 42 7110.0 43 9816.0 44 12522.0 45 15394.5 46 18267.0 47 21258.5 48 24250.0 49 24602.5 50 24955.0 51 22016.5 52 19078.0 53 16015.0 54 12952.0 55 10927.5 56 8903.0 57 7660.0 58 6417.0 59 5848.5 60 5280.0 61 4902.0 62 4524.0 63 4006.0 64 2891.5 65 2295.0 66 1859.0 67 1423.0 68 1200.5 69 978.0 70 841.5 71 705.0 72 593.5 73 482.0 74 416.5 75 351.0 76 287.0 77 223.0 78 157.0 79 91.0 80 62.5 81 34.0 82 32.5 83 31.0 84 21.5 85 12.0 86 6.5 87 1.0 88 1.5 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 173857.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.98072553880488 #Duplication Level Percentage of deduplicated Percentage of total 1 71.75911676145869 30.84258902431308 2 9.840080294412846 8.458675808279217 3 4.066912010705922 5.243964867678609 4 2.9066577450652393 4.997210351035621 5 2.3860823017731683 5.1277774262756175 6 1.9551689528270324 5.042074808607073 7 1.6232853797256606 4.88389883640003 8 1.2566075610572098 4.320792375342954 9 0.936768149882904 3.6236677269250013 >10 3.1609233857477417 20.509384149042027 >50 0.0588825694212111 1.622022696814048 >100 0.04416192706590833 3.2141357552471286 >500 0.0026764804282368685 0.8386202453740718 >1k 0.0026764804282368685 1.2751859286655125 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT 1202 0.6913727948831512 TruSeq Adapter, Index 13 (95% over 23bp) CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCTT 1015 0.5838131337823613 TruSeq Adapter, Index 16 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT 870 0.5004112575277383 TruSeq Adapter, Index 13 (95% over 23bp) TGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCTTG 588 0.33820898784633346 TruSeq Adapter, Index 13 (96% over 25bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 428 0.24617933128950803 No Hit ACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 336 0.1932622787693334 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT 320 0.18405931311365087 TruSeq Adapter, Index 13 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 286 0.16450301109532547 TruSeq Adapter, Index 13 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 254 0.1460970797839604 No Hit AGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 248 0.14264596766307944 TruSeq Adapter, Index 16 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 245 0.14092041160263896 TruSeq Adapter, Index 16 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT 237 0.13631892877479768 TruSeq Adapter, Index 16 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG 192 0.11043558786819052 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 184 0.10583410504034925 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 177 0.10180780756598813 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.597042396912405 0.0 2 0.0 0.0 0.0 2.13451284676487 0.0 3 0.0 0.0 0.0 3.310766894631795 0.0 4 0.0 0.0 0.0 4.083816009709129 0.0 5 0.0 0.0 0.0 7.99507641337421 0.0 6 0.0 0.0 0.0 8.731313665828813 0.0 7 0.0 0.0 0.0 12.3728121387117 0.0 8 0.0 0.0 0.0 16.178813622689912 0.0 9 0.0 0.0 0.0 19.9710106581846 0.0 10 0.0 0.0 0.0 21.63559707115618 0.0 11 0.0 0.0 0.0 23.251292729081946 0.0 12 0.0 0.0 0.0 24.579395710267633 0.0 13 0.0 0.0 0.0 25.082107709209293 0.0 14 0.0 0.0 0.0 25.45942930109228 0.0 15 0.0 0.0 0.0 26.731164117636908 0.0 16 0.0 0.0 0.0 28.07594747407352 0.0 17 0.0 0.0 0.0 29.95162691177232 0.0 18 0.0 0.0 0.0 30.67866119857124 0.0 19 0.0 0.0 0.0 31.723197800491207 0.0 20 0.0 0.0 0.0 32.86148961502844 0.0 21 0.0 0.0 0.0 33.81399656039159 0.0 22 0.0 0.0 0.0 34.9499876335149 0.0 23 0.0 0.0 0.0 35.66839414001162 0.0 24 5.75185353480159E-4 0.0 0.0 36.35401508135997 0.0 25 0.001150370706960318 0.0 0.0 36.99017008230902 0.0 26 0.001150370706960318 0.0 0.0 37.61942285901632 0.0 27 0.001150370706960318 0.0 0.0 38.21589007057524 0.0 28 0.001150370706960318 0.0 0.0 38.767492824562716 0.0 29 0.001150370706960318 0.0 0.0 39.508906745198644 0.0 30 0.001150370706960318 0.0 0.0 40.251471036541524 0.0 31 0.001150370706960318 0.0 0.0 40.80192341982204 0.0 32 0.001150370706960318 0.0 0.0 41.42657471370149 0.0 33 0.001150370706960318 0.0 0.0 41.95517005354976 0.0 34 0.001150370706960318 0.0 0.0 42.69945990095308 0.0 35 0.001150370706960318 0.0 0.0 43.25796487918232 0.0 36 0.001150370706960318 0.0 0.0 43.768729473072696 0.0 37 0.001150370706960318 0.0 0.0 44.30077592504185 0.0 38 0.001150370706960318 0.0 0.0 44.83914941589927 0.0 39 0.001150370706960318 0.0 0.0 45.424112920388595 0.0 40 0.001150370706960318 0.0 0.0 46.006200498110516 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 35 1.01288606E-7 46.000004 5 ACTGCGG 35 1.01288606E-7 46.000004 1 CGTAGGG 35 1.01288606E-7 46.000004 2 GTCACGG 35 1.01288606E-7 46.000004 1 CGGGCAA 70 0.0 46.000004 5 GCAGGGT 35 1.01288606E-7 46.000004 3 AAGATTG 35 1.01288606E-7 46.000004 13 CTAGCGG 35 1.01288606E-7 46.000004 1 TCAAAGG 35 1.01288606E-7 46.000004 1 CGTGGGA 20 6.29661E-4 46.0 3 AACCGGG 20 6.29661E-4 46.0 2 AATCCGG 20 6.29661E-4 46.0 1 TCGTTGA 25 3.4051205E-5 46.0 23 ACAAATG 20 6.29661E-4 46.0 26 ACACGAC 25 3.4051205E-5 46.0 25 ATGATCG 25 3.4051205E-5 46.0 26 TTAATCG 25 3.4051205E-5 46.0 19 AAGAGTG 25 3.4051205E-5 46.0 35 GTCGAAT 25 3.4051205E-5 46.0 29 ATAGGGT 40 5.5642886E-9 46.0 3 >>END_MODULE