##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545011_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 491194 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94136939783466 34.0 33.0 34.0 31.0 34.0 2 33.27778433775657 34.0 34.0 34.0 31.0 34.0 3 33.39969950773014 34.0 34.0 34.0 31.0 34.0 4 36.61928077297361 37.0 37.0 37.0 35.0 37.0 5 36.62386755538545 37.0 37.0 37.0 35.0 37.0 6 36.42862697834257 37.0 37.0 37.0 35.0 37.0 7 36.23854729495881 37.0 37.0 37.0 35.0 37.0 8 36.40149513226953 37.0 37.0 37.0 35.0 37.0 9 38.29291481573472 39.0 39.0 39.0 37.0 39.0 10 38.15804346144294 39.0 39.0 39.0 35.0 39.0 11 37.419962377390604 39.0 35.0 39.0 35.0 39.0 12 37.37547893500328 39.0 35.0 39.0 35.0 39.0 13 37.37955064597695 39.0 35.0 39.0 35.0 39.0 14 38.591200218243706 41.0 35.0 41.0 35.0 41.0 15 38.61495865177506 41.0 35.0 41.0 35.0 41.0 16 38.62519289730738 41.0 35.0 41.0 35.0 41.0 17 38.7253284852828 41.0 36.0 41.0 35.0 41.0 18 38.73502322911111 41.0 36.0 41.0 35.0 41.0 19 38.66402480486325 41.0 35.0 41.0 35.0 41.0 20 38.609693929486106 41.0 35.0 41.0 35.0 41.0 21 38.561468584713985 41.0 35.0 41.0 35.0 41.0 22 38.54300744715937 41.0 35.0 41.0 35.0 41.0 23 38.52666767102204 41.0 35.0 41.0 35.0 41.0 24 38.4777480995289 40.0 35.0 41.0 35.0 41.0 25 38.430829773979326 40.0 35.0 41.0 35.0 41.0 26 38.382392700236565 40.0 35.0 41.0 35.0 41.0 27 38.46542710212258 40.0 35.0 41.0 35.0 41.0 28 38.47622324376926 40.0 35.0 41.0 35.0 41.0 29 38.48382716401259 40.0 36.0 41.0 35.0 41.0 30 38.401092032883135 40.0 35.0 41.0 35.0 41.0 31 38.319120347561245 40.0 35.0 41.0 35.0 41.0 32 38.2671408852714 40.0 35.0 41.0 35.0 41.0 33 38.17925911147123 40.0 35.0 41.0 35.0 41.0 34 38.04626481593831 40.0 35.0 41.0 35.0 41.0 35 37.98879261554498 40.0 35.0 41.0 35.0 41.0 36 37.94933977206562 40.0 35.0 41.0 35.0 41.0 37 37.860845205763916 40.0 35.0 41.0 35.0 41.0 38 37.8563785388258 40.0 35.0 41.0 35.0 41.0 39 37.77579327109044 40.0 35.0 41.0 35.0 41.0 40 37.725530034975996 40.0 35.0 41.0 35.0 41.0 41 37.67628472660497 40.0 35.0 41.0 35.0 41.0 42 37.61984674079895 39.0 35.0 41.0 35.0 41.0 43 37.556578459834604 39.0 35.0 41.0 35.0 41.0 44 37.436969914127616 39.0 35.0 41.0 35.0 41.0 45 37.45517656974637 39.0 35.0 41.0 35.0 41.0 46 37.4180303505336 39.0 35.0 41.0 35.0 41.0 47 37.345537608358406 39.0 35.0 41.0 35.0 41.0 48 37.30090147680957 39.0 35.0 41.0 35.0 41.0 49 37.23867962556546 39.0 35.0 41.0 35.0 41.0 50 37.18311298590781 38.0 35.0 41.0 35.0 41.0 51 37.12393473861651 38.0 35.0 41.0 35.0 41.0 52 36.682819822717704 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 3.0 15 4.0 16 12.0 17 9.0 18 39.0 19 54.0 20 106.0 21 170.0 22 280.0 23 403.0 24 763.0 25 1329.0 26 1915.0 27 2147.0 28 2162.0 29 2235.0 30 2531.0 31 3077.0 32 4111.0 33 6269.0 34 23147.0 35 110271.0 36 16252.0 37 27005.0 38 47164.0 39 237694.0 40 2039.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.190755587405384 21.26675000101793 23.270642556708754 22.271851854867933 2 26.445355602877886 24.39321327214909 26.7089988884229 22.45243223655012 3 27.029442542050596 24.208968350590602 26.03696299221896 22.72462611513984 4 25.910536366486564 26.81506695928696 23.094744642646287 24.17965203158019 5 23.914583647194387 34.7025818719284 21.222979108050993 20.159855372826215 6 85.49452965630687 2.490869188141549 8.519037284657385 3.495563870894188 7 84.97314706612866 2.463181553520605 6.470559493804892 6.093111886545845 8 74.0198373758637 4.455469732936478 13.454968912486716 8.069723978713094 9 52.237201594482016 15.92405444691914 15.709475278606824 16.12926867999202 10 42.44534745945594 17.9704963822848 25.238296884733934 14.345859273525328 11 39.253736812746084 15.676494419720111 25.415416312088503 19.654352455445302 12 19.57006803829037 31.559017414707835 30.137379528251568 18.73353501875023 13 14.478393465718229 34.57269429186838 31.428519078001766 19.52039316441162 14 13.260341127945374 20.598378644690285 47.31267075737896 18.828609469985384 15 15.028888789358177 16.65798034992284 47.594025985659435 20.71910487505955 16 15.580198455192857 19.510824643623497 29.88920874440649 35.01976815677716 17 18.390289783669996 21.80930548825922 35.37197115599946 24.42843357207132 18 23.44328310199229 26.64670171052578 27.86678990378547 22.04322528369646 19 25.53044214709463 22.62955166390469 25.442900361160763 26.397105827839916 20 19.791161944160557 31.340773706519215 26.77068530967398 22.09737903964625 21 19.797065925072374 23.84332870515519 25.712244042068917 30.647361327703514 22 18.005513096658348 30.322235206456106 23.508226892022297 28.164024804863253 23 18.436300117672445 21.855519407810355 36.96848902877478 22.739691445742416 24 18.7830063070803 21.167603838809107 34.88621603684084 25.163173817269758 25 15.175470384410234 28.330557783686285 31.165282963554112 25.32868886834937 26 18.32432806589657 27.049597511370255 27.897734907185352 26.728339515547827 27 20.38033852205035 25.124696148568592 35.62991404618134 18.865051283199712 28 18.397211692325232 23.133425896896135 31.618871566020758 26.850490844757875 29 19.880536000032574 25.5320708314841 29.733465799663676 24.85392736881965 30 28.689886277112503 24.095164028876574 21.47746104390526 25.73748865010566 31 28.52070668615659 23.265349332442987 26.585422460372072 21.62852152102835 32 25.89709972027346 24.92905043628383 24.0310345810413 25.142815262401413 33 20.251876040831117 25.21610605992744 30.414866631107056 24.117151268134382 34 20.48762810620651 23.941864110717965 30.67016290915606 24.90034487391947 35 26.860059365545997 25.292247055135036 26.121654580471258 21.726038998847706 36 23.749475767212143 29.82711515205805 24.123258834594886 22.30015024613493 37 19.968688542612494 34.382545389398075 24.519843483430172 21.128922584559255 38 21.157424561374935 31.10115351571884 22.892787778352343 24.848634144553884 39 26.945158124895663 24.67477208597825 24.485233940153993 23.894835848972097 40 19.046038835979267 21.419846333627852 29.00422236427969 30.529892466113186 41 22.743763156716085 25.03634002043999 24.524729536598574 27.695167286245354 42 22.940223211195576 20.640113682170387 28.476121450994924 27.943541655639116 43 24.325012113340147 24.724039788759637 28.65792334596921 22.29302475193101 44 17.745941522086998 28.580153666372148 27.63592389157848 26.03798091996238 45 21.960569550930998 27.824851280756686 26.565878247698464 23.64870092061385 46 23.735631949901666 21.77164216175279 28.61679906513516 25.87592682321038 47 22.59901383160218 19.764899408380394 31.83467224762517 25.801414512392252 48 22.045261139183296 17.96337088808088 29.1870421869974 30.804325785738424 49 20.2999222303204 24.076026987300335 30.554729903052564 25.0693208793267 50 20.301958085807236 25.170910068119724 27.75033896993856 26.77679287613448 51 19.731714963945 20.791174159293476 30.95029662414443 28.526814252617093 52 22.151329210047354 18.97885560491374 34.2608012312854 24.609013953753507 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 95.0 1 184.0 2 273.0 3 1109.5 4 1946.0 5 1319.0 6 692.0 7 744.5 8 797.0 9 866.5 10 936.0 11 883.5 12 831.0 13 796.5 14 692.0 15 622.0 16 604.0 17 586.0 18 640.5 19 695.0 20 701.5 21 708.0 22 704.0 23 700.0 24 815.5 25 931.0 26 1110.5 27 1290.0 28 1652.5 29 2015.0 30 2298.0 31 2581.0 32 2771.0 33 2961.0 34 3783.5 35 4606.0 36 5196.5 37 5787.0 38 6843.0 39 10212.0 40 12525.0 41 19179.0 42 25833.0 43 37107.0 44 48381.0 45 59107.0 46 69833.0 47 68623.5 48 67414.0 49 58734.5 50 50055.0 51 43404.0 52 36753.0 53 32428.0 54 28103.0 55 24942.0 56 21781.0 57 20283.0 58 18785.0 59 18360.5 60 17936.0 61 16927.5 62 15919.0 63 14542.5 64 11022.0 65 8878.0 66 7547.0 67 6216.0 68 4997.0 69 3778.0 70 3378.5 71 2979.0 72 2444.0 73 1909.0 74 1717.5 75 1526.0 76 1259.0 77 992.0 78 696.5 79 401.0 80 299.5 81 198.0 82 123.0 83 48.0 84 58.0 85 68.0 86 35.0 87 2.0 88 1.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 491194.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.84270244261449 #Duplication Level Percentage of deduplicated Percentage of total 1 70.63224220296294 20.372247447147373 2 11.397226254762272 6.574536110745235 3 4.073620916359038 3.524827078636629 4 1.9783409732416128 2.2824280008496083 5 1.1709045986654314 1.6886026463997987 6 0.8501334194706963 1.47120871525894 7 0.6513748281668558 1.3151187243198033 8 0.5276354554794468 1.2174745952453638 9 0.49632436137133534 1.2883802283048682 >10 7.816575833284971 47.245160004643324 >50 0.31855064625820156 6.127078574252488 >100 0.07999160672705949 4.2172284298438845 >500 0.0035394516250911285 0.753200468540019 >1k 0.0035394516250911285 1.9225089758126372 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 2855 0.581236741491142 No Hit CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTT 2212 0.4503312336877079 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 1920 0.39088425347215155 No Hit TGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTTG 1360 0.2768763462094407 Illumina Single End Adapter 1 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1069 0.21763295154256768 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 993 0.20216044984262835 No Hit TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 710 0.1445457395652227 No Hit ACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 710 0.1445457395652227 No Hit GCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 675 0.13742024536130326 No Hit CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 601 0.12235491475873075 No Hit ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 496 0.10097843214697248 No Hit ACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 494 0.10057126104960565 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4584746556350444 0.0 2 0.0 0.0 0.0 1.6950532783380905 0.0 3 0.0 0.0 0.0 2.6050806809529434 0.0 4 0.0 0.0 0.0 3.2052508784716425 0.0 5 0.0 0.0 0.0 6.379353167994723 0.0 6 2.0358554868341226E-4 0.0 0.0 7.001714190319914 0.0 7 2.0358554868341226E-4 0.0 0.0 10.189456711604784 0.0 8 2.0358554868341226E-4 0.0 0.0 13.405904795254013 0.0 9 2.0358554868341226E-4 0.0 0.0 16.643118604868953 0.0 10 2.0358554868341226E-4 0.0 0.0 17.967035427957182 0.0 11 2.0358554868341226E-4 0.0 0.0 19.254103266733715 0.0 12 2.0358554868341226E-4 0.0 0.0 20.384206647475335 0.0 13 2.0358554868341226E-4 0.0 0.0 20.79972475233818 0.0 14 2.0358554868341226E-4 0.0 0.0 21.087798303725208 0.0 15 2.0358554868341226E-4 0.0 0.0 22.15886187534864 0.0 16 2.0358554868341226E-4 0.0 0.0 23.20345932564323 0.0 17 2.0358554868341226E-4 0.0 0.0 24.724446959857 0.0 18 2.0358554868341226E-4 0.0 0.0 25.368388050342634 0.0 19 2.0358554868341226E-4 0.0 0.0 26.320761247083638 0.0 20 2.0358554868341226E-4 0.0 0.0 27.261122896452317 0.0 21 2.0358554868341226E-4 0.0 0.0 28.01296432774016 0.0 22 4.071710973668245E-4 0.0 0.0 28.86008379581184 0.0 23 4.071710973668245E-4 0.0 0.0 29.454146426870036 0.0 24 4.071710973668245E-4 0.0 0.0 29.93949437493129 0.0 25 4.071710973668245E-4 0.0 0.0 30.454565813100324 0.0 26 4.071710973668245E-4 0.0 0.0 30.92098030513402 0.0 27 4.071710973668245E-4 0.0 0.0 31.411621477461043 0.0 28 4.071710973668245E-4 0.0 0.0 31.857473829077716 0.0 29 4.071710973668245E-4 0.0 0.0 32.45744044104773 0.0 30 4.071710973668245E-4 0.0 0.0 33.05964649405327 0.0 31 4.071710973668245E-4 0.0 0.0 33.537054605715866 0.0 32 4.071710973668245E-4 0.0 0.0 34.03787505547706 0.0 33 4.071710973668245E-4 0.0 0.0 34.488409874713454 0.0 34 4.071710973668245E-4 0.0 0.0 35.12441112880043 0.0 35 4.071710973668245E-4 0.0 0.0 35.59163996302886 0.0 36 4.071710973668245E-4 0.0 0.0 36.06945524578883 0.0 37 4.071710973668245E-4 0.0 0.0 36.54523467306197 0.0 38 4.071710973668245E-4 0.0 0.0 37.007984625219365 0.0 39 4.071710973668245E-4 0.0 0.0 37.50167958077664 0.0 40 4.071710973668245E-4 0.0 0.0 38.04301355472583 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACGG 35 1.0179792E-7 46.000004 1 GTGCACG 20 6.3079066E-4 46.0 20 GGTACAC 20 6.3079066E-4 46.0 7 AGATCGT 20 6.3079066E-4 46.0 10 GTACAGG 120 0.0 46.0 1 AAATACG 20 6.3079066E-4 46.0 27 CACGGGT 25 3.4142773E-5 46.0 3 TACGGGA 65 0.0 46.0 3 ACGGGTA 45 3.092282E-10 46.0 4 ACGGGCC 20 6.3079066E-4 46.0 4 AATGCGG 65 0.0 46.0 1 ACCTAGG 45 3.092282E-10 46.0 1 CTAAACG 20 6.3079066E-4 46.0 45 GGTATGT 20 6.3079066E-4 46.0 7 ACGCTAA 20 6.3079066E-4 46.0 34 ATGCGCT 20 6.3079066E-4 46.0 2 TTCGGAC 25 3.4142773E-5 46.0 13 GGCATAG 40 5.6006684E-9 46.0 7 ATAACGG 20 6.3079066E-4 46.0 1 ACGTAGG 55 1.8189894E-12 46.0 1 >>END_MODULE